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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS05820 and ABID97_RS05825 are separated by 129 nucleotides
ABID97_RS05825 and ABID97_RS05830 overlap by 4 nucleotides
ABID97_RS05830 and ABID97_RS05835 are separated by 27 nucleotides
ABID97_RS05835 and ABID97_RS05840 are separated by 73 nucleotides
ABID97_RS05820: ABID97_RS05820 - FadR/GntR family transcriptional regulator, at 1,230,818 to 1,231,525
_RS05820
ABID97_RS05825: ABID97_RS05825 - SDR family oxidoreductase, at 1,231,655 to 1,232,389
_RS05825
ABID97_RS05830: ABID97_RS05830 - SDR family NAD(P)-dependent oxidoreductase, at 1,232,386 to 1,233,132
_RS05830
ABID97_RS05835: ABID97_RS05835 - fumarylacetoacetate hydrolase family protein, at 1,233,160 to 1,234,008
_RS05835
ABID97_RS05840: ABID97_RS05840 - LysR substrate-binding domain-containing protein, at 1,234,082 to 1,234,966
_RS05840
Group
Condition
ABID97
_RS05820
ABID97
_RS05825
ABID97
_RS05830
ABID97
_RS05835
ABID97
_RS05840
carbon source
L-Fucose (C)
+0.2
-1.4
-0.7
-1.4
-0.4
carbon source
D-Xylose (C)
+0.8
-1.1
+0.1
-2.5
-0.4
carbon source
L-Fucose (C)
-0.2
-0.8
-0.1
-1.3
-0.1
carbon source
L-Phenylalanine (C)
-2.6
-0.0
+0.3
-0.0
-0.0
carbon source
D-Galactose (C)
-0.9
+0.2
-0.3
-0.3
-0.5
carbon source
D-Xylose (C)
+0.8
-0.1
-0.0
-2.6
+0.1
carbon source
L-Malic (C)
-0.7
-0.5
-0.3
-0.3
-0.1
carbon source
D,L-Lactate (C)
-1.1
-0.2
-0.2
-0.0
-0.3
carbon source
L-Phenylalanine (C)
-2.0
-0.5
+0.7
+0.5
-0.2
carbon source
L-Leucine (C)
-1.1
-0.0
-0.2
+0.2
-0.3
carbon source
Glycolic Acid (C)
-1.4
-0.4
+0.2
+0.1
+0.0
carbon source
D-Ribose (C)
-0.9
-0.4
-0.3
+0.2
-0.0
carbon source
D,L-Malic Acid (C)
-0.9
-0.3
+0.3
+0.0
-0.5
carbon source
L-Tryptophan (C)
-1.1
+0.2
-0.3
+0.1
-0.2
carbon source
L-Asparagine (C)
-1.2
+0.2
+0.5
+0.1
-0.1
carbon source
acetate (C)
-0.5
-0.2
+0.3
+0.5
-0.3
carbon source
D-Mannose (C)
-0.6
+0.7
+0.4
+0.2
-0.3
carbon source
L-tyrosine (C)
+1.3
-0.2
-0.2
-0.1
-0.4
carbon source
L-Threonine (C)
+1.2
+0.2
-0.5
-0.1
+0.0
carbon source
L-Threonine (C)
+1.1
+0.0
+0.2
+0.3
-0.3
carbon source
L-Arabinose (C)
+0.7
+0.4
+0.6
-0.2
-0.1
carbon source
2-Deoxy-D-Ribose (C)
+1.4
-0.2
+0.2
+0.4
-0.2
carbon source
L-Arabinose (C)
+0.7
+0.5
+0.6
-0.1
+0.2
carbon source
propionate (C)
+2.1
+0.3
-0.2
+0.1
-0.1
carbon source
2-Deoxy-D-Ribose (C)
+2.5
+0.2
+0.3
+0.1
-0.2
carbon source
Glucuronamide (C)
+4.1
-0.2
-0.3
-0.7
+0.2
carbon source
Glucuronamide (C)
+4.0
+0.0
+0.4
+0.2
-0.1
carbon source
D-Glucuronic Acid (C)
+2.4
+0.4
+0.5
+2.5
-0.1
carbon source
D-Arabinose (C)
+11.5
+6.8
+2.4
-1.1
+1.2
carbon source
D-Arabinose (C)
+11.6
+7.0
+2.0
-0.7
+0.9
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