Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS05650 and ABID97_RS05655 are separated by 3 nucleotidesABID97_RS05655 and ABID97_RS05660 are separated by 432 nucleotidesABID97_RS05660 and ABID97_RS05665 overlap by 4 nucleotidesABID97_RS05665 and ABID97_RS05670 are separated by 37 nucleotides ABID97_RS05650: ABID97_RS05650 - RtcB family protein, at 1,187,296 to 1,188,705 _RS05650 ABID97_RS05655: ABID97_RS05655 - D-amino acid dehydrogenase, at 1,188,709 to 1,190,025 _RS05655 ABID97_RS05660: ABID97_RS05660 - dTDP-glucose 4,6-dehydratase, at 1,190,458 to 1,191,540 _RS05660 ABID97_RS05665: ABID97_RS05665 - dTDP-4-dehydrorhamnose reductase, at 1,191,537 to 1,192,427 _RS05665 ABID97_RS05670: ABID97_RS05670 - glucose-1-phosphate thymidylyltransferase RfbA, at 1,192,465 to 1,193,364 _RS05670
Group Condition ABID97_RS05650 ABID97_RS05655 ABID97_RS05660 ABID97_RS05665 ABID97_RS05670
phage V2_1 +0.1 +0.1 N.D. N.D. -4.4
phage V1_1 +0.1 +0.1 N.D. N.D. -4.4
control NP +0.0 +0.1 N.D. N.D. -4.2
r2a outgrowth control R2A outgrowth control +0.0 -0.1 N.D. N.D. -3.7
phage V2_1 +0.1 +0.0 N.D. N.D. -3.8
phage V1_1 +0.1 -0.1 N.D. N.D. -3.6
carbon source Gly-Glu (C) +0.2 -1.6 N.D. N.D. -2.1
r2a outgrowth control R2A outgrowth control +0.0 -0.1 N.D. N.D. -3.2
carbon source Gly-Glu (C) +0.2 -1.2 N.D. N.D. -2.1
carbon source casaminos (C) -0.1 -0.1 N.D. N.D. -2.7
r2a outgrowth control R2A outgrowth control -0.0 -0.1 N.D. N.D. -2.6
plant outgrowth control Plant outgrowth control +0.2 +0.1 N.D. N.D. -3.0
phage V1_10 +0.0 +0.1 N.D. N.D. -2.7
plant outgrowth control Plant outgrowth control +0.1 +0.0 N.D. N.D. -2.7
carbon source D-Mannose (C) -0.0 -0.2 N.D. N.D. -2.4
phage V1_10 +0.0 +0.1 N.D. N.D. -2.6
carbon source Adenine (C) -0.0 -0.1 N.D. N.D. -2.2
carbon source D-Gluconic Acid (C) -0.2 -0.1 N.D. N.D. -2.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.2 N.D. N.D. -2.4
r2a outgrowth control R2A outgrowth control -0.1 -0.0 N.D. N.D. -2.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.2 N.D. N.D. -2.3
carbon source D,L-Lactate (C) +0.0 -0.2 N.D. N.D. -2.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.0 N.D. N.D. -2.4
carbon source D-Xylose (C) -0.1 -0.1 N.D. N.D. -2.1
phage V2_10 +0.1 +0.2 N.D. N.D. -2.5
carbon source D-Mannose (C) +0.1 -0.1 N.D. N.D. -2.2
carbon source Tween 20 (C) +0.1 -0.1 N.D. N.D. -2.1
carbon source succinate (C) +0.2 +0.0 N.D. N.D. -2.2
phage V2_10 +0.3 +0.1 N.D. N.D. -2.0
carbon source L-tyrosine (C) -0.1 -0.3 N.D. N.D. +2.8
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