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Gene
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Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS05590 and ABID97_RS05595 are separated by 5 nucleotides
ABID97_RS05595 and ABID97_RS05600 are separated by 10 nucleotides
ABID97_RS05600 and ABID97_RS05605 are separated by 5 nucleotides
ABID97_RS05605 and ABID97_RS05610 are separated by 4 nucleotides
ABID97_RS05590: ABID97_RS05590 - LysE family translocator, at 1,176,357 to 1,176,989
_RS05590
ABID97_RS05595: ABID97_RS05595 - VOC family protein, at 1,176,995 to 1,177,687
_RS05595
ABID97_RS05600: ABID97_RS05600 - PhzF family phenazine biosynthesis protein, at 1,177,698 to 1,178,624
_RS05600
ABID97_RS05605: ABID97_RS05605 - glutathione S-transferase, at 1,178,630 to 1,179,271
_RS05605
ABID97_RS05610: ABID97_RS05610 - LysE family translocator, at 1,179,276 to 1,179,947
_RS05610
Group
Condition
ABID97
_RS05590
ABID97
_RS05595
ABID97
_RS05600
ABID97
_RS05605
ABID97
_RS05610
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-0.4
-0.2
-0.5
-0.1
-0.5
carbon source
L-Threonine (C)
+0.2
+0.1
-1.0
-0.4
-0.1
phage
V2_100
-0.1
-0.0
+0.1
-0.3
-0.7
carbon source
D-Glucose (C)
-0.1
-0.0
-0.5
-0.4
+0.2
carbon source
pyruvate (C)
+0.1
-0.3
+0.1
+0.2
-0.8
carbon source
L-Leucine (C)
+0.0
-0.2
+0.3
-0.2
-0.5
control
NP
+0.1
-0.1
+0.1
+0.2
-0.8
carbon source
succinate (C)
+0.1
-0.4
-0.3
+0.2
+0.3
carbon source
L-tyrosine (C)
-0.3
+0.3
+0.3
-0.0
-0.4
carbon source
D-Sorbitol (C)
-0.0
-0.1
+0.6
-0.0
-0.5
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
-0.3
+0.3
-0.1
+0.3
carbon source
D,L-Malic Acid (C)
-0.1
-0.5
+0.0
+0.3
+0.3
carbon source
butyrate (C)
-0.2
+0.4
+0.4
-0.2
-0.2
carbon source
D,L-Malic Acid (C)
-0.2
-0.2
+0.0
-0.1
+0.7
phage
V2_1
-0.0
-0.5
+0.4
+0.1
+0.3
carbon source
casaminos (C)
+0.0
+0.5
+0.5
-0.3
-0.3
carbon source
propionate (C)
-0.2
+0.0
+0.2
-0.2
+0.6
carbon source
L-Threonine (C)
-0.0
-0.1
-0.1
-0.2
+1.0
carbon source
D-Ribose (C)
-0.1
-0.3
-0.1
+0.3
+0.8
carbon source
Tween 20 (C)
-0.1
+0.2
+0.6
-0.2
+0.2
carbon source
Ethanol (C)
+0.0
-0.0
+0.1
-0.1
+0.9
carbon source
D-Ribose (C)
+0.0
-0.1
+0.1
+0.1
+0.8
carbon source
L-Glutamine (C)
+0.0
+0.4
-0.1
+0.3
+0.5
carbon source
L-Arabinose (C)
+0.2
+0.6
+0.3
-0.1
+0.2
carbon source
L-tyrosine (C)
+0.1
+0.1
+0.4
-0.3
+0.8
carbon source
Ethanol (C)
+0.0
+0.2
+0.2
+0.3
+0.6
carbon source
Formate (C)
-0.1
-0.2
+0.5
+0.1
+1.0
carbon source
Glycolic Acid (C)
+0.0
+0.2
+0.2
+0.2
+0.9
carbon source
L-Histidine (C)
+0.3
-0.2
-0.8
+0.3
+2.0
carbon source
L-Histidine (C)
+0.2
+0.3
-0.6
+0.3
+2.1
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ABID97_RS05600
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