Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS05030 and ABID97_RS05035 are separated by 22 nucleotidesABID97_RS05035 and ABID97_RS05040 overlap by 8 nucleotidesABID97_RS05040 and ABID97_RS05045 are separated by 27 nucleotidesABID97_RS05045 and ABID97_RS05050 overlap by 25 nucleotides ABID97_RS05030: ABID97_RS05030 - hypothetical protein, at 1,059,968 to 1,060,525 _RS05030 ABID97_RS05035: ABID97_RS05035 - type VI secretion system accessory protein TagJ, at 1,060,548 to 1,061,390 _RS05035 ABID97_RS05040: ABID97_RS05040 - type VI secretion system baseplate subunit TssE, at 1,061,383 to 1,061,895 _RS05040 ABID97_RS05045: ABID97_RS05045 - type VI secretion system baseplate subunit TssF, at 1,061,923 to 1,063,815 _RS05045 ABID97_RS05050: ABID97_RS05050 - type VI secretion system baseplate subunit TssG, at 1,063,791 to 1,064,870 _RS05050
Group Condition ABID97_RS05030 ABID97_RS05035 ABID97_RS05040 ABID97_RS05045 ABID97_RS05050
carbon source D-Glucose (C) -0.8 -0.2 N.D. -0.3 -0.2
carbon source Fumarate (C) -0.2 -0.5 N.D. -0.3 -0.4
carbon source propionate (C) +0.2 -0.3 N.D. -0.4 -0.8
carbon source L-Phenylalanine (C) -0.7 +0.0 N.D. -0.4 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.1 N.D. -0.2 -1.1
carbon source D,L-Malic Acid (C) -0.1 +0.1 N.D. -0.3 -0.6
carbon source acetate (C) -0.4 -0.3 N.D. -0.3 +0.3
carbon source D-Arabinose (C) -0.2 -0.6 N.D. -0.1 +0.3
r2a outgrowth control R2A outgrowth control -0.3 +0.6 N.D. -0.0 -0.5
carbon source Glycolic Acid (C) -0.3 +0.5 N.D. +0.1 -0.3
carbon source L-Histidine (C) -0.3 +0.5 N.D. +0.3 -0.5
carbon source 4-Hydroxybenzoic Acid (C) +0.2 -0.3 N.D. -0.4 +0.4
carbon source L-Alanine (C) +0.3 -0.4 N.D. -0.2 +0.2
carbon source D-Serine (C) +0.1 +0.5 N.D. -0.4 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 -0.3 N.D. -0.4 -0.2
carbon source L-Glutamine (C) +0.4 +0.2 N.D. +0.2 -0.4
carbon source D-Arabinose (C) -0.3 +0.3 N.D. +0.6 -0.1
carbon source D-Mannose (C) +0.5 +0.2 N.D. +0.2 -0.3
carbon source L-Asparagine (C) -0.3 +0.3 N.D. +0.3 +0.6
carbon source acetate (C) +0.5 +0.4 N.D. +0.1 -0.2
carbon source L-Alanine (C) +0.4 +0.5 N.D. +0.3 -0.3
carbon source L-tyrosine (C) -0.2 -0.0 N.D. +0.5 +0.8
carbon source butyrate (C) +0.5 +0.2 N.D. +0.1 +0.2
carbon source D-Serine (C) +0.2 +0.7 N.D. -0.0 +0.4
carbon source L-Histidine (C) +0.2 -0.1 N.D. +0.6 +0.5
carbon source D-Glucuronic Acid (C) +0.5 +0.6 N.D. +0.4 -0.1
carbon source D,L-Malic Acid (C) +0.5 +0.5 N.D. +0.3 +0.0
carbon source L-Tryptophan (C) +0.4 +0.3 N.D. +0.5 +0.3
carbon source Formate (C) +0.0 +0.6 N.D. +0.5 +0.4
carbon source L-Arabinose (C) +0.5 +0.4 N.D. +0.6 +0.3
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