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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS04860 and ABID97_RS04865 are separated by 158 nucleotides
ABID97_RS04865 and ABID97_RS04870 are separated by 0 nucleotides
ABID97_RS04870 and ABID97_RS04875 are separated by 32 nucleotides
ABID97_RS04875 and ABID97_RS04880 are separated by 101 nucleotides
ABID97_RS04860: ABID97_RS04860 - phosphatidylglycerophosphatase A, at 1,011,191 to 1,011,718
_RS04860
ABID97_RS04865: ABID97_RS04865 - DUF3053 domain-containing protein, at 1,011,877 to 1,012,587
_RS04865
ABID97_RS04870: ABID97_RS04870 - thiamine-phosphate kinase, at 1,012,588 to 1,013,544
_RS04870
ABID97_RS04875: ABID97_RS04875 - isochorismatase family protein, at 1,013,577 to 1,014,206
_RS04875
ABID97_RS04880: ABID97_RS04880 - helix-turn-helix domain-containing protein, at 1,014,308 to 1,015,285
_RS04880
Group
Condition
ABID97
_RS04860
ABID97
_RS04865
ABID97
_RS04870
ABID97
_RS04875
ABID97
_RS04880
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
-0.4
N.D.
N.D.
-0.6
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
+0.4
N.D.
N.D.
-0.5
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
-0.1
N.D.
N.D.
+0.7
phage
V1_10
N.D.
-0.2
N.D.
N.D.
+0.9
carbon source
L-Histidine (C)
N.D.
-0.1
N.D.
N.D.
+0.9
carbon source
D-Serine (C)
N.D.
+0.1
N.D.
N.D.
+0.8
carbon source
L-Asparagine (C)
N.D.
+0.2
N.D.
N.D.
+0.7
carbon source
D-Xylose (C)
N.D.
+0.3
N.D.
N.D.
+0.6
phage
V2_10
N.D.
-0.1
N.D.
N.D.
+1.0
carbon source
D-Serine (C)
N.D.
+0.3
N.D.
N.D.
+0.6
carbon source
D-Sorbitol (C)
N.D.
+0.2
N.D.
N.D.
+0.7
carbon source
Glycerol (C)
N.D.
+0.2
N.D.
N.D.
+0.7
carbon source
L-Alanine (C)
N.D.
+0.2
N.D.
N.D.
+0.8
carbon source
D-Arabinose (C)
N.D.
+0.2
N.D.
N.D.
+0.7
carbon source
L-Arabinose (C)
N.D.
+0.2
N.D.
N.D.
+0.7
carbon source
a-Ketoglutaric (C)
N.D.
+0.1
N.D.
N.D.
+0.8
carbon source
Formate (C)
N.D.
+0.2
N.D.
N.D.
+0.8
carbon source
D,L-Malic Acid (C)
N.D.
+0.3
N.D.
N.D.
+0.7
carbon source
Formate (C)
N.D.
+0.2
N.D.
N.D.
+0.8
carbon source
Glucuronamide (C)
N.D.
+0.1
N.D.
N.D.
+0.9
carbon source
D-Glucuronic Acid (C)
N.D.
+0.2
N.D.
N.D.
+0.8
carbon source
L-Histidine (C)
N.D.
+0.1
N.D.
N.D.
+0.9
phage
V2_10
N.D.
+0.3
N.D.
N.D.
+0.8
carbon source
D-Xylose (C)
N.D.
+0.2
N.D.
N.D.
+0.9
carbon source
Ethanol (C)
N.D.
+0.4
N.D.
N.D.
+0.8
carbon source
D-Fructose (C)
N.D.
+0.1
N.D.
N.D.
+1.0
carbon source
Glucuronamide (C)
N.D.
+0.1
N.D.
N.D.
+1.1
carbon source
D-Fructose (C)
N.D.
+0.1
N.D.
N.D.
+1.3
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
+0.2
N.D.
N.D.
+1.6
phage
V2_100
N.D.
+0.0
N.D.
N.D.
+2.7
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