Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS04710 and ABID97_RS04715 are separated by 61 nucleotidesABID97_RS04715 and ABID97_RS04720 are separated by 103 nucleotidesABID97_RS04720 and ABID97_RS04725 are separated by 115 nucleotidesABID97_RS04725 and ABID97_RS04730 overlap by 8 nucleotides ABID97_RS04710: ABID97_RS04710 - malate synthase G, at 980,739 to 982,913 _RS04710 ABID97_RS04715: ABID97_RS04715 - haloacid dehalogenase type II, at 982,975 to 983,652 _RS04715 ABID97_RS04720: ABID97_RS04720 - IclR family transcriptional regulator, at 983,756 to 984,496 _RS04720 ABID97_RS04725: ABID97_RS04725 - hydroxymethylglutaryl-CoA lyase, at 984,612 to 985,550 _RS04725 ABID97_RS04730: ABID97_RS04730 - CaiB/BaiF CoA-transferase family protein, at 985,543 to 986,733 _RS04730
Group Condition ABID97_RS04710 ABID97_RS04715 ABID97_RS04720 ABID97_RS04725 ABID97_RS04730
carbon source Tween 20 (C) -5.4 -0.4 -0.1 -0.1 +0.1
carbon source L-Leucine (C) -4.9 -0.5 -0.0 +0.0 -0.1
carbon source Glycolic Acid (C) -3.7 -2.1 -0.1 +0.4 +0.1
carbon source acetate (C) -5.6 +0.0 -0.1 +0.1 +0.1
carbon source L-Leucine (C) -5.0 -0.6 +0.1 +0.4 +0.1
carbon source acetate (C) -4.3 -0.2 -0.1 +0.2 +0.1
carbon source Tween 20 (C) -4.2 -0.1 +0.2 +0.2 -0.0
carbon source butyrate (C) -3.8 -0.1 +0.2 +0.1 +0.7
carbon source butyrate (C) -3.4 -0.5 +0.2 +0.3 +0.9
carbon source Glycolic Acid (C) -1.7 -0.6 -0.2 +0.4 +0.1
carbon source L-Tryptophan (C) -1.4 -0.1 +0.0 -0.1 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.0 +0.1 +0.0 +0.3 +0.2
carbon source L-Histidine (C) -1.7 -0.0 +0.0 +0.2 +0.2
carbon source L-Tryptophan (C) -1.4 +0.0 +0.0 -0.0 +0.1
carbon source L-Histidine (C) -1.6 -0.3 +0.2 +0.2 +0.3
carbon source 2-Deoxy-D-Ribose (C) -1.2 -0.1 -0.1 +0.1 +0.3
carbon source 4-Hydroxybenzoic Acid (C) -1.2 -0.1 +0.0 +0.0 +0.3
carbon source 2-Deoxy-D-Ribose (C) -1.2 -0.1 -0.1 +0.3 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.9 +0.2 +0.4 +0.0 +0.4
carbon source L-Phenylalanine (C) -1.1 -0.0 +0.1 +0.0 +0.1
carbon source D-Glucuronic Acid (C) -0.8 -0.1 -0.3 +0.5 -0.2
carbon source Formate (C) -1.6 +0.0 +0.3 +0.4 +0.1
carbon source L-tyrosine (C) -1.1 +0.1 +0.1 +0.1 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -0.0 +0.2 +0.2 +0.2
carbon source Formate (C) -1.2 +0.2 +0.5 +0.0 +0.4
carbon source 4-Hydroxybenzoic Acid (C) -0.7 +0.1 -0.0 +0.5 -0.0
carbon source Adenine (C) +1.0 -0.4 -0.5 +0.1 -0.0
carbon source Adenine (C) +0.8 -0.4 -0.2 +0.0 +0.0
carbon source D-Glucose (C) -0.5 +0.2 -0.2 +0.5 +0.2
carbon source propionate (C) -0.2 +0.1 +0.2 +0.7 +0.3
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ABID97_RS04715
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