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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS04665 and ABID97_RS04670 are separated by 4 nucleotides
ABID97_RS04670 and ABID97_RS04675 overlap by 1 nucleotides
ABID97_RS04675 and ABID97_RS04680 are separated by 130 nucleotides
ABID97_RS04680 and ABID97_RS04685 are separated by 84 nucleotides
ABID97_RS04665: ABID97_RS04665 - acyl-CoA dehydrogenase family protein, at 972,847 to 974,010
_RS04665
ABID97_RS04670: ABID97_RS04670 - enoyl-CoA hydratase-related protein, at 974,015 to 974,818
_RS04670
ABID97_RS04675: ABID97_RS04675 - acetyl-CoA C-acetyltransferase, at 974,818 to 975,996
_RS04675
ABID97_RS04680: ABID97_RS04680 - DUF2917 domain-containing protein, at 976,127 to 976,450
_RS04680
ABID97_RS04685: ABID97_RS04685 - LysR substrate-binding domain-containing protein, at 976,535 to 977,470
_RS04685
Group
Condition
ABID97
_RS04665
ABID97
_RS04670
ABID97
_RS04675
ABID97
_RS04680
ABID97
_RS04685
carbon source
L-tyrosine (C)
-0.2
-0.5
+0.2
N.D.
-1.0
carbon source
Glucuronamide (C)
+0.1
-0.2
+0.3
N.D.
-1.3
carbon source
L-Malic (C)
-0.0
-0.1
-0.1
N.D.
-1.0
carbon source
L-Fucose (C)
-0.2
+0.1
+0.0
N.D.
-1.1
carbon source
L-Asparagine (C)
-0.1
-0.4
+0.2
N.D.
-0.9
phage
V1_10
-0.2
+0.3
-0.0
N.D.
-1.0
carbon source
butyrate (C)
+0.2
+1.0
+0.2
N.D.
-2.2
carbon source
L-Alanine (C)
-0.2
+0.3
-0.1
N.D.
-0.6
carbon source
D,L-Lactate (C)
-0.1
-0.2
+0.3
N.D.
-0.6
carbon source
D-Galactose (C)
-0.1
-0.3
+0.3
N.D.
-0.4
carbon source
D-Serine (C)
-0.1
+0.3
+0.3
N.D.
-0.7
carbon source
D-Mannose (C)
-0.1
-0.5
+0.2
N.D.
+0.3
carbon source
acetate (C)
-0.2
-0.3
+0.1
N.D.
+0.6
carbon source
L-Fucose (C)
-0.2
-0.2
+0.1
N.D.
+0.5
carbon source
D-Glucuronic Acid (C)
-0.4
-0.1
+0.2
N.D.
+0.5
carbon source
Glycerol (C)
-0.1
-0.3
+0.2
N.D.
+0.5
carbon source
Glycolic Acid (C)
-0.2
+0.2
-0.2
N.D.
+0.7
carbon source
casaminos (C)
-0.2
-0.1
+0.1
N.D.
+0.7
carbon source
succinate (C)
-0.3
+0.3
+0.1
N.D.
+0.5
carbon source
Adenine (C)
-0.2
+0.1
+0.2
N.D.
+0.6
carbon source
D,L-Malic Acid (C)
-0.1
+0.3
-0.0
N.D.
+0.6
carbon source
D-Sorbitol (C)
-0.3
+0.1
+0.1
N.D.
+1.0
carbon source
2-Deoxy-D-Ribose (C)
-0.1
+0.1
+0.2
N.D.
+0.8
carbon source
L-Asparagine (C)
-0.1
+0.3
+0.2
N.D.
+0.6
carbon source
D-Mannose (C)
+0.1
+0.3
-0.1
N.D.
+0.8
carbon source
Fumarate (C)
-0.1
+0.5
-0.0
N.D.
+0.8
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
+0.4
+0.2
N.D.
+0.5
carbon source
L-Arabinose (C)
+0.2
+0.3
+0.0
N.D.
+0.8
carbon source
L-Phenylalanine (C)
+0.0
+0.5
+0.4
N.D.
+0.7
carbon source
D-Ribose (C)
+0.5
+0.5
+0.4
N.D.
+0.6
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