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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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500 nt
ABID97_RS04650 and ABID97_RS04655 overlap by 10 nucleotides
ABID97_RS04655 and ABID97_RS04660 overlap by 1 nucleotides
ABID97_RS04660 and ABID97_RS04665 are separated by 48 nucleotides
ABID97_RS04665 and ABID97_RS04670 are separated by 4 nucleotides
ABID97_RS04650: ABID97_RS04650 - putative zinc-binding metallopeptidase, at 969,918 to 971,312
_RS04650
ABID97_RS04655: ABID97_RS04655 - cysteine-rich CWC family protein, at 971,303 to 971,542
_RS04655
ABID97_RS04660: ABID97_RS04660 - 6-phosphofructokinase, at 971,542 to 972,798
_RS04660
ABID97_RS04665: ABID97_RS04665 - acyl-CoA dehydrogenase family protein, at 972,847 to 974,010
_RS04665
ABID97_RS04670: ABID97_RS04670 - enoyl-CoA hydratase-related protein, at 974,015 to 974,818
_RS04670
Group
Condition
ABID97
_RS04650
ABID97
_RS04655
ABID97
_RS04660
ABID97
_RS04665
ABID97
_RS04670
carbon source
D-Mannose (C)
-0.2
N.D.
-0.5
-0.1
-0.5
carbon source
L-tyrosine (C)
-0.4
N.D.
-0.2
-0.2
-0.5
carbon source
D-Ribose (C)
+0.2
N.D.
-2.0
+0.3
+0.3
carbon source
propionate (C)
-0.4
N.D.
-0.3
-0.3
-0.0
carbon source
Ethanol (C)
-0.1
N.D.
-0.3
+0.0
-0.4
carbon source
propionate (C)
-0.5
N.D.
-0.2
-0.0
+0.1
carbon source
succinate (C)
+0.1
N.D.
-0.1
-0.2
-0.3
carbon source
D-Ribose (C)
+0.3
N.D.
-1.8
+0.5
+0.5
carbon source
acetate (C)
+0.2
N.D.
-0.1
-0.2
-0.3
carbon source
D-Glucuronic Acid (C)
-0.1
N.D.
+0.4
-0.4
-0.1
carbon source
D-Galactose (C)
+0.1
N.D.
-0.4
+0.2
-0.0
carbon source
L-Alanine (C)
+0.1
N.D.
-0.4
-0.2
+0.3
carbon source
D-Mannose (C)
-0.0
N.D.
-0.5
+0.1
+0.3
carbon source
Formate (C)
-0.0
N.D.
+0.4
-0.1
-0.4
carbon source
D-Serine (C)
+0.2
N.D.
-0.1
-0.3
+0.2
carbon source
4-Hydroxybenzoic Acid (C)
+0.3
N.D.
-0.3
-0.0
+0.0
carbon source
D,L-Malic Acid (C)
-0.0
N.D.
-0.2
-0.1
+0.3
carbon source
a-Ketoglutaric (C)
-0.1
N.D.
-0.0
-0.3
+0.4
carbon source
succinate (C)
+0.1
N.D.
+0.0
-0.3
+0.3
carbon source
D-Fructose (C)
+0.1
N.D.
+0.1
-0.3
+0.3
carbon source
D-Serine (C)
-0.0
N.D.
+0.4
-0.1
+0.3
carbon source
L-Glutamic (C)
+0.1
N.D.
+0.2
-0.2
+0.4
carbon source
butyrate (C)
+0.2
N.D.
-0.3
+0.1
+0.5
carbon source
Fumarate (C)
+0.2
N.D.
-0.0
-0.1
+0.5
carbon source
Tween 20 (C)
-0.0
N.D.
+0.2
-0.0
+0.5
carbon source
D-Lactate (C)
+0.4
N.D.
+0.2
+0.0
-0.1
carbon source
D-Xylose (C)
+0.1
N.D.
+0.1
-0.0
+0.5
carbon source
L-Phenylalanine (C)
+0.2
N.D.
+0.3
+0.0
+0.5
carbon source
4-Hydroxybenzoic Acid (C)
+0.4
N.D.
+0.1
+0.2
+0.4
carbon source
butyrate (C)
+0.2
N.D.
-0.0
+0.2
+1.0
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