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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS04530 and ABID97_RS04535 are separated by 42 nucleotides
ABID97_RS04535 and ABID97_RS04540 are separated by 17 nucleotides
ABID97_RS04540 and ABID97_RS04545 are separated by 40 nucleotides
ABID97_RS04545 and ABID97_RS04550 are separated by 4 nucleotides
ABID97_RS04530: ABID97_RS04530 - glycogen/starch/alpha-glucan phosphorylase, at 937,115 to 939,598
_RS04530
ABID97_RS04535: ABID97_RS04535 - glycogen synthase GlgA, at 939,641 to 941,125
_RS04535
ABID97_RS04540: ABID97_RS04540 - glucose-1-phosphate adenylyltransferase, at 941,143 to 942,447
_RS04540
ABID97_RS04545: ABID97_RS04545 - glycogen debranching protein GlgX, at 942,488 to 944,611
_RS04545
ABID97_RS04550: ABID97_RS04550 - 1,4-alpha-glucan branching protein GlgB, at 944,616 to 946,787
_RS04550
Group
Condition
ABID97
_RS04530
ABID97
_RS04535
ABID97
_RS04540
ABID97
_RS04545
ABID97
_RS04550
carbon source
a-Ketoglutaric (C)
-0.3
-0.1
-0.3
-0.1
-0.0
carbon source
Adenine (C)
-0.3
-0.3
-0.0
+0.1
-0.2
carbon source
D-Mannose (C)
-0.5
-0.3
+0.1
+0.2
-0.2
carbon source
L-Malic (C)
-0.2
-0.1
-0.2
+0.1
-0.2
carbon source
L-tyrosine (C)
-0.4
+0.0
-0.2
+0.1
-0.2
carbon source
L-Asparagine (C)
-0.3
-0.2
-0.2
+0.2
-0.2
carbon source
L-Alanine (C)
+0.1
-0.1
-0.4
+0.1
-0.3
carbon source
acetate (C)
-0.1
-0.4
-0.1
+0.1
-0.1
carbon source
D-Arabinose (C)
-0.1
-0.2
-0.1
+0.2
-0.3
carbon source
Adenine (C)
-0.2
-0.3
+0.0
+0.1
-0.2
carbon source
propionate (C)
-0.1
+0.1
-0.4
+0.1
-0.2
carbon source
L-Phenylalanine (C)
-0.4
-0.2
+0.1
-0.1
+0.1
carbon source
L-Tryptophan (C)
-0.1
-0.1
-0.3
+0.2
-0.1
plant outgrowth control
Plant outgrowth control
-0.2
-0.3
-0.2
+0.3
-0.1
carbon source
Glucuronamide (C)
-0.3
-0.1
+0.0
+0.2
-0.1
carbon source
D-Gluconic Acid (C)
-0.2
-0.2
+0.2
+0.1
-0.2
carbon source
D-Serine (C)
+0.0
-0.1
-0.2
+0.2
-0.1
carbon source
L-tyrosine (C)
+0.2
-0.1
-0.1
+0.1
-0.2
carbon source
D-Ribose (C)
-0.3
-0.1
+0.3
+0.1
-0.1
carbon source
Formate (C)
-0.3
+0.2
-0.1
+0.1
-0.1
carbon source
L-Phenylalanine (C)
-0.5
+0.2
-0.0
+0.1
+0.1
carbon source
D-Arabinose (C)
-0.0
-0.1
-0.1
+0.4
-0.2
plant outgrowth control
Plant outgrowth control
-0.0
-0.0
-0.1
+0.4
-0.2
carbon source
L-Lactate (C)
-0.1
+0.2
-0.2
+0.2
-0.0
phage
V2_100
-0.1
+0.2
-0.3
+0.1
+0.2
carbon source
D-Glucose (C)
-0.1
-0.0
+0.4
+0.1
-0.2
r2a outgrowth control
R2A outgrowth control
-0.1
+0.3
+0.0
+0.4
-0.1
carbon source
D-Glucose (C)
-0.2
+0.1
+0.6
+0.1
-0.1
carbon source
butyrate (C)
-0.5
+1.0
+0.8
+0.8
+0.1
carbon source
butyrate (C)
-0.4
+1.0
+0.8
+1.0
+0.2
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