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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS04415 and ABID97_RS04420 are separated by 24 nucleotides
ABID97_RS04420 and ABID97_RS04425 are separated by 169 nucleotides
ABID97_RS04425 and ABID97_RS04430 are separated by 352 nucleotides
ABID97_RS04430 and ABID97_RS04435 are separated by 39 nucleotides
ABID97_RS04415: ABID97_RS04415 - tRNA 2-thiouridine(34) synthase MnmA, at 914,125 to 915,231
_RS04415
ABID97_RS04420: ABID97_RS04420 - NUDIX hydrolase, at 915,256 to 915,738
_RS04420
ABID97_RS04425: ABID97_RS04425 - response regulator transcription factor, at 915,908 to 916,603
_RS04425
ABID97_RS04430: ABID97_RS04430 - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 916,956 to 918,086
_RS04430
ABID97_RS04435: ABID97_RS04435 - NAD(P) transhydrogenase subunit alpha, at 918,126 to 918,458
_RS04435
Group
Condition
ABID97
_RS04415
ABID97
_RS04420
ABID97
_RS04425
ABID97
_RS04430
ABID97
_RS04435
carbon source
Tween 20 (C)
N.D.
-0.3
-0.5
N.D.
N.D.
carbon source
D-Serine (C)
N.D.
-0.3
-0.5
N.D.
N.D.
carbon source
L-tyrosine (C)
N.D.
+0.1
-0.9
N.D.
N.D.
carbon source
D,L-Malic Acid (C)
N.D.
-0.2
-0.5
N.D.
N.D.
carbon source
a-Ketoglutaric (C)
N.D.
-0.1
-0.5
N.D.
N.D.
carbon source
L-Fucose (C)
N.D.
+0.0
-0.7
N.D.
N.D.
carbon source
L-Alanine (C)
N.D.
+0.1
-0.7
N.D.
N.D.
carbon source
acetate (C)
N.D.
-0.2
-0.5
N.D.
N.D.
carbon source
D,L-Lactate (C)
N.D.
-0.2
-0.4
N.D.
N.D.
carbon source
L-Asparagine (C)
N.D.
-0.2
-0.4
N.D.
N.D.
carbon source
Tween 20 (C)
N.D.
-0.2
-0.4
N.D.
N.D.
carbon source
D-Arabinose (C)
N.D.
-0.1
-0.5
N.D.
N.D.
carbon source
L-Glutamine (C)
N.D.
-0.1
-0.5
N.D.
N.D.
plant outgrowth control
Plant outgrowth control
N.D.
-0.1
-0.5
N.D.
N.D.
carbon source
L-Threonine (C)
N.D.
-0.1
-0.4
N.D.
N.D.
carbon source
L-Glutamic (C)
N.D.
-0.0
-0.5
N.D.
N.D.
carbon source
L-Glutamine (C)
N.D.
-0.0
-0.5
N.D.
N.D.
carbon source
Adenine (C)
N.D.
-0.1
-0.4
N.D.
N.D.
phage
V1_1
N.D.
-0.1
-0.4
N.D.
N.D.
carbon source
D-Sorbitol (C)
N.D.
-0.2
-0.3
N.D.
N.D.
carbon source
L-Alanine (C)
N.D.
-0.2
-0.2
N.D.
N.D.
carbon source
L-Tryptophan (C)
N.D.
-0.1
-0.4
N.D.
N.D.
carbon source
D-Mannose (C)
N.D.
+0.0
-0.5
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
N.D.
+0.0
-0.5
N.D.
N.D.
carbon source
L-Lactate (C)
N.D.
+0.1
-0.5
N.D.
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
+0.2
-0.4
N.D.
N.D.
carbon source
2-Deoxy-D-Ribose (C)
N.D.
+0.3
-0.4
N.D.
N.D.
carbon source
propionate (C)
N.D.
+0.4
-0.2
N.D.
N.D.
carbon source
butyrate (C)
N.D.
-0.1
+1.0
N.D.
N.D.
carbon source
butyrate (C)
N.D.
+0.2
+0.7
N.D.
N.D.
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