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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS04255 and ABID97_RS04260 are separated by 71 nucleotides
ABID97_RS04260 and ABID97_RS04265 are separated by 22 nucleotides
ABID97_RS04265 and ABID97_RS04270 are separated by 66 nucleotides
ABID97_RS04270 and ABID97_RS04275 are separated by 50 nucleotides
ABID97_RS04255: ABID97_RS04255 - gentisate 1,2-dioxygenase, at 873,955 to 875,034
_RS04255
ABID97_RS04260: ABID97_RS04260 - fumarylacetoacetate hydrolase family protein, at 875,106 to 875,813
_RS04260
ABID97_RS04265: ABID97_RS04265 - 3-hydroxybenzoate 6-monooxygenase, at 875,836 to 877,089
_RS04265
ABID97_RS04270: ABID97_RS04270 - tripartite tricarboxylate transporter substrate binding protein, at 877,156 to 878,139
_RS04270
ABID97_RS04275: ABID97_RS04275 - tripartite tricarboxylate transporter substrate-binding protein, at 878,190 to 879,167
_RS04275
Group
Condition
ABID97
_RS04255
ABID97
_RS04260
ABID97
_RS04265
ABID97
_RS04270
ABID97
_RS04275
carbon source
L-Malic (C)
-0.3
-0.4
-0.3
-0.0
-0.7
carbon source
Glycolic Acid (C)
-0.5
-0.6
-0.0
-0.2
-0.2
carbon source
L-Arabinose (C)
-0.0
-0.5
-0.1
-0.5
-0.4
carbon source
Glucuronamide (C)
+0.1
-0.2
-0.4
-0.3
-0.5
carbon source
L-Asparagine (C)
-0.3
-0.1
-0.0
-0.4
-0.4
carbon source
D-Mannose (C)
-0.2
-0.2
-0.1
-0.2
-0.4
carbon source
Tween 20 (C)
-0.6
-0.5
+0.2
-0.1
-0.2
carbon source
L-Histidine (C)
-0.3
-0.1
+0.1
-0.4
-0.3
carbon source
L-Malic (C)
-0.4
-0.1
-0.1
-0.1
-0.4
carbon source
D-Arabinose (C)
-0.2
-0.3
+0.0
-0.3
-0.3
carbon source
D-Mannose (C)
-0.3
-0.1
+0.1
-0.4
-0.2
carbon source
L-Alanine (C)
-0.2
-0.4
+0.1
-0.1
-0.3
carbon source
casaminos (C)
+0.2
-0.2
-0.2
-0.1
-0.5
carbon source
D-Ribose (C)
+0.2
-0.5
-0.1
-0.1
-0.3
carbon source
casaminos (C)
+0.3
-0.2
-0.1
-0.2
-0.5
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
+0.2
-0.2
-0.5
+0.0
-0.2
carbon source
D,L-Malic Acid (C)
+0.1
-0.0
+0.2
-0.5
-0.3
carbon source
D-Arabinose (C)
+0.3
-0.2
-0.2
-0.1
-0.4
r2a outgrowth control
R2A outgrowth control
-0.1
+0.3
-0.1
-0.1
-0.4
carbon source
Fumarate (C)
+0.3
+0.1
-0.0
-0.2
-0.4
carbon source
L-tyrosine (C)
-0.1
-0.3
+0.2
+0.3
-0.1
carbon source
butyrate (C)
+0.1
+0.2
-0.2
+0.3
-0.4
carbon source
4-Hydroxybenzoic Acid (C)
+0.5
-0.5
-0.1
+0.1
+0.3
carbon source
D-Glucuronic Acid (C)
+0.2
+0.4
+0.2
+0.2
-0.3
carbon source
propionate (C)
-0.0
+0.7
+0.1
+0.7
-0.5
phage
V1_10
+0.6
+0.2
+0.2
-0.0
+0.5
phage
V2_10
+0.3
+0.4
+0.4
+0.1
+0.5
phage
V2_10
+0.3
+0.3
+0.3
+0.2
+0.8
phage
V1_10
+0.5
+0.4
+0.3
+0.1
+0.8
phage
V2_100
+0.8
+0.8
+0.6
+0.3
+1.0
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