Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS04255 and ABID97_RS04260 are separated by 71 nucleotidesABID97_RS04260 and ABID97_RS04265 are separated by 22 nucleotidesABID97_RS04265 and ABID97_RS04270 are separated by 66 nucleotidesABID97_RS04270 and ABID97_RS04275 are separated by 50 nucleotides ABID97_RS04255: ABID97_RS04255 - gentisate 1,2-dioxygenase, at 873,955 to 875,034 _RS04255 ABID97_RS04260: ABID97_RS04260 - fumarylacetoacetate hydrolase family protein, at 875,106 to 875,813 _RS04260 ABID97_RS04265: ABID97_RS04265 - 3-hydroxybenzoate 6-monooxygenase, at 875,836 to 877,089 _RS04265 ABID97_RS04270: ABID97_RS04270 - tripartite tricarboxylate transporter substrate binding protein, at 877,156 to 878,139 _RS04270 ABID97_RS04275: ABID97_RS04275 - tripartite tricarboxylate transporter substrate-binding protein, at 878,190 to 879,167 _RS04275
Group Condition ABID97_RS04255 ABID97_RS04260 ABID97_RS04265 ABID97_RS04270 ABID97_RS04275
carbon source L-Malic (C) -0.3 -0.4 -0.3 -0.0 -0.7
carbon source Glycolic Acid (C) -0.5 -0.6 -0.0 -0.2 -0.2
carbon source L-Arabinose (C) -0.0 -0.5 -0.1 -0.5 -0.4
carbon source Glucuronamide (C) +0.1 -0.2 -0.4 -0.3 -0.5
carbon source L-Asparagine (C) -0.3 -0.1 -0.0 -0.4 -0.4
carbon source D-Mannose (C) -0.2 -0.2 -0.1 -0.2 -0.4
carbon source Tween 20 (C) -0.6 -0.5 +0.2 -0.1 -0.2
carbon source L-Histidine (C) -0.3 -0.1 +0.1 -0.4 -0.3
carbon source L-Malic (C) -0.4 -0.1 -0.1 -0.1 -0.4
carbon source D-Arabinose (C) -0.2 -0.3 +0.0 -0.3 -0.3
carbon source D-Mannose (C) -0.3 -0.1 +0.1 -0.4 -0.2
carbon source L-Alanine (C) -0.2 -0.4 +0.1 -0.1 -0.3
carbon source casaminos (C) +0.2 -0.2 -0.2 -0.1 -0.5
carbon source D-Ribose (C) +0.2 -0.5 -0.1 -0.1 -0.3
carbon source casaminos (C) +0.3 -0.2 -0.1 -0.2 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.2 -0.5 +0.0 -0.2
carbon source D,L-Malic Acid (C) +0.1 -0.0 +0.2 -0.5 -0.3
carbon source D-Arabinose (C) +0.3 -0.2 -0.2 -0.1 -0.4
r2a outgrowth control R2A outgrowth control -0.1 +0.3 -0.1 -0.1 -0.4
carbon source Fumarate (C) +0.3 +0.1 -0.0 -0.2 -0.4
carbon source L-tyrosine (C) -0.1 -0.3 +0.2 +0.3 -0.1
carbon source butyrate (C) +0.1 +0.2 -0.2 +0.3 -0.4
carbon source 4-Hydroxybenzoic Acid (C) +0.5 -0.5 -0.1 +0.1 +0.3
carbon source D-Glucuronic Acid (C) +0.2 +0.4 +0.2 +0.2 -0.3
carbon source propionate (C) -0.0 +0.7 +0.1 +0.7 -0.5
phage V1_10 +0.6 +0.2 +0.2 -0.0 +0.5
phage V2_10 +0.3 +0.4 +0.4 +0.1 +0.5
phage V2_10 +0.3 +0.3 +0.3 +0.2 +0.8
phage V1_10 +0.5 +0.4 +0.3 +0.1 +0.8
phage V2_100 +0.8 +0.8 +0.6 +0.3 +1.0
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