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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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500 nt
ABID97_RS04185 and ABID97_RS04190 overlap by 4 nucleotides
ABID97_RS04190 and ABID97_RS04195 are separated by 15 nucleotides
ABID97_RS04195 and ABID97_RS04200 are separated by 59 nucleotides
ABID97_RS04200 and ABID97_RS04205 are separated by 108 nucleotides
ABID97_RS04185: ABID97_RS04185 - M20 aminoacylase family protein, at 860,964 to 862,166
_RS04185
ABID97_RS04190: ABID97_RS04190 - M14 family metallopeptidase, at 862,163 to 863,257
_RS04190
ABID97_RS04195: ABID97_RS04195 - ABC transporter substrate-binding protein, at 863,273 to 864,397
_RS04195
ABID97_RS04200: ABID97_RS04200 - molybdopterin oxidoreductase family protein, at 864,457 to 866,508
_RS04200
ABID97_RS04205: ABID97_RS04205 - aminopeptidase, at 866,617 to 867,663
_RS04205
Group
Condition
ABID97
_RS04185
ABID97
_RS04190
ABID97
_RS04195
ABID97
_RS04200
ABID97
_RS04205
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
-0.3
-0.2
-0.4
-0.5
carbon source
L-Fucose (C)
-0.5
-0.2
-0.1
-0.2
-0.1
r2a outgrowth control
R2A outgrowth control
-0.2
-0.1
-0.1
-0.2
-0.2
carbon source
D-Mannose (C)
-0.1
-0.3
-0.1
-0.2
-0.1
carbon source
L-Glutamine (C)
+0.1
-0.3
-0.1
-0.4
-0.2
carbon source
L-Leucine (C)
-0.2
-0.1
-0.3
-0.2
-0.1
carbon source
D-Gluconic Acid (C)
-0.2
-0.2
-0.3
-0.1
+0.0
carbon source
L-Glutamic (C)
-0.2
-0.2
+0.1
-0.4
-0.1
carbon source
D,L-Malic Acid (C)
+0.2
-0.2
-0.1
-0.4
-0.2
carbon source
L-Asparagine (C)
-0.1
-0.3
+0.0
-0.3
+0.1
carbon source
Glucuronamide (C)
+0.2
-0.1
-0.1
-0.4
-0.3
carbon source
Glycerol (C)
+0.1
-0.2
-0.3
-0.1
-0.1
carbon source
propionate (C)
-0.5
-0.2
+0.5
-0.2
-0.0
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
-0.3
-0.1
-0.0
-0.3
carbon source
D-Glucose (C)
-0.1
-0.3
-0.5
+0.4
+0.1
carbon source
D-Sorbitol (C)
+0.3
-0.2
-0.1
-0.3
-0.1
carbon source
D-Galactose (C)
+0.2
-0.2
-0.2
-0.3
+0.0
carbon source
a-Ketoglutaric (C)
-0.2
-0.2
-0.2
+0.3
-0.1
carbon source
D-Glucose (C)
+0.1
-0.1
-0.4
+0.3
-0.0
carbon source
butyrate (C)
+0.2
+0.3
+0.2
-0.5
-0.3
carbon source
butyrate (C)
+0.5
-0.1
-0.1
-0.2
-0.1
carbon source
Fumarate (C)
+0.3
-0.2
-0.1
+0.2
-0.2
carbon source
L-Histidine (C)
+0.1
-0.3
-0.1
+0.3
-0.0
carbon source
D-Ribose (C)
+0.5
-0.2
-0.0
-0.2
+0.0
carbon source
casaminos (C)
+0.4
-0.1
+0.1
-0.3
+0.1
phage
V1_10
+0.1
+0.1
-0.4
+0.4
+0.1
phage
V1_10
+0.1
+0.1
-0.4
+0.4
+0.2
phage
V2_10
+0.3
+0.1
-0.7
+0.5
+0.2
phage
V2_10
+0.2
+0.1
-0.5
+0.6
+0.1
phage
V2_100
+0.2
+0.0
-0.6
+0.7
+0.3
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