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Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS04085 and ABID97_RS04090 are separated by 16 nucleotides
ABID97_RS04090 and ABID97_RS04095 are separated by 415 nucleotides
ABID97_RS04095 and ABID97_RS04100 are separated by 22 nucleotides
ABID97_RS04100 and ABID97_RS04105 are separated by 6 nucleotides
ABID97_RS04085: ABID97_RS04085 - thiamine pyrophosphate-binding protein, at 838,258 to 839,931
_RS04085
ABID97_RS04090: ABID97_RS04090 - hypothetical protein, at 839,948 to 840,247
_RS04090
ABID97_RS04095: ABID97_RS04095 - TSUP family transporter, at 840,663 to 841,421
_RS04095
ABID97_RS04100: ABID97_RS04100 - chromate efflux transporter, at 841,444 to 842,790
_RS04100
ABID97_RS04105: ABID97_RS04105 - tripartite tricarboxylate transporter permease, at 842,797 to 844,308
_RS04105
Group
Condition
ABID97
_RS04085
ABID97
_RS04090
ABID97
_RS04095
ABID97
_RS04100
ABID97
_RS04105
phage
V2_10
-0.1
-0.3
-0.5
-0.3
-0.6
phage
V2_100
+0.4
-0.3
-0.5
-0.3
-0.8
phage
V1_10
-0.1
-0.4
-0.4
-0.2
-0.3
phage
V1_10
-0.2
-0.1
-0.3
-0.3
-0.5
phage
V2_10
+0.0
-0.2
-0.3
-0.2
-0.5
carbon source
D,L-Malic Acid (C)
+0.1
-0.8
+0.4
+0.1
-0.1
carbon source
4-Hydroxybenzoic Acid (C)
-0.3
+0.0
-0.3
+0.2
+0.6
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-0.0
+0.4
+0.4
-0.4
+0.1
carbon source
Adenine (C)
-0.2
+0.2
-0.1
+0.3
+0.5
carbon source
Glucuronamide (C)
-0.3
+0.2
+1.0
-0.1
+0.1
carbon source
4-Hydroxybenzoic Acid (C)
-0.0
+0.4
-0.1
+0.3
+0.4
carbon source
Tween 20 (C)
-0.1
+0.1
+0.3
+0.2
+0.6
carbon source
2-Deoxy-D-Ribose (C)
+0.2
-0.1
+0.2
+0.2
+0.7
carbon source
D-Xylose (C)
-0.1
+0.2
+0.4
+0.1
+0.5
carbon source
D-Arabinose (C)
+0.1
+0.2
+0.5
+0.2
+0.3
carbon source
D-Mannose (C)
+0.2
+0.3
+0.4
-0.0
+0.4
carbon source
D-Ribose (C)
+0.1
+0.5
+0.2
+0.1
+0.4
carbon source
L-Proline (C)
+0.2
+0.2
+0.5
-0.0
+0.4
carbon source
D-Arabinose (C)
+0.2
+0.2
+0.3
+0.1
+0.5
carbon source
casaminos (C)
+0.1
+0.5
+0.5
+0.1
+0.3
carbon source
2-Deoxy-D-Ribose (C)
+0.2
+0.2
+0.3
+0.3
+0.5
carbon source
L-Leucine (C)
+0.2
+0.1
+0.4
+0.2
+0.6
carbon source
L-Phenylalanine (C)
+0.2
+0.3
+0.3
+0.2
+0.6
carbon source
L-Alanine (C)
-0.3
+1.4
+0.2
+0.0
+0.4
carbon source
L-Tryptophan (C)
+0.3
+0.3
+0.3
+0.3
+0.6
carbon source
L-Leucine (C)
+0.2
+0.3
+0.3
+0.3
+0.7
carbon source
Glucuronamide (C)
+0.2
+0.1
+1.0
+0.1
+0.4
carbon source
L-Phenylalanine (C)
+0.4
+0.3
+0.5
+0.4
+0.6
carbon source
L-Histidine (C)
+0.5
+0.4
+0.7
+0.3
+1.1
carbon source
L-Histidine (C)
+0.4
+0.7
+0.5
+0.5
+1.2
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