Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS04015 and ABID97_RS04020 are separated by 138 nucleotidesABID97_RS04020 and ABID97_RS04025 are separated by 118 nucleotidesABID97_RS04025 and ABID97_RS04030 are separated by 12 nucleotidesABID97_RS04030 and ABID97_RS04035 overlap by 4 nucleotides ABID97_RS04015: ABID97_RS04015 - LysR family transcriptional regulator, at 822,952 to 823,878 _RS04015 ABID97_RS04020: ABID97_RS04020 - GMC family oxidoreductase N-terminal domain-containing protein, at 824,017 to 825,648 _RS04020 ABID97_RS04025: ABID97_RS04025 - ABC transporter substrate-binding protein, at 825,767 to 826,840 _RS04025 ABID97_RS04030: ABID97_RS04030 - FAD-binding oxidoreductase, at 826,853 to 827,983 _RS04030 ABID97_RS04035: ABID97_RS04035 - NAD(P)/FAD-dependent oxidoreductase, at 827,980 to 829,398 _RS04035
Group Condition ABID97_RS04015 ABID97_RS04020 ABID97_RS04025 ABID97_RS04030 ABID97_RS04035
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.0 +0.0 -6.1 -3.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.0 -0.1 -4.3 -2.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.0 -0.0 -2.3 -3.7
r2a outgrowth control R2A outgrowth control N.D. -0.3 +0.0 -1.8 -1.3
plant outgrowth control Plant outgrowth control N.D. -0.1 -0.2 -1.4 -1.1
plant outgrowth control Plant outgrowth control N.D. -0.1 -0.2 -1.5 -1.0
r2a outgrowth control R2A outgrowth control N.D. -0.1 +0.2 -1.4 -1.1
carbon source L-tyrosine (C) N.D. -1.1 -0.3 -1.3 +0.3
r2a outgrowth control R2A outgrowth control N.D. -0.1 +0.1 -1.1 -1.2
carbon source 2-Deoxy-D-Ribose (C) N.D. -1.2 -0.1 -0.7 +0.0
r2a outgrowth control R2A outgrowth control N.D. +0.0 +0.0 -1.0 -1.0
carbon source Glycolic Acid (C) N.D. -0.6 +0.0 -0.8 -0.3
carbon source L-Alanine (C) N.D. -0.2 -0.6 -0.5 -0.4
carbon source Glycolic Acid (C) N.D. -0.5 -0.2 -0.3 -0.4
carbon source L-Alanine (C) N.D. -0.4 -0.3 -0.4 -0.4
phage V2_1 N.D. -0.0 -0.1 -0.7 -0.6
carbon source casaminos (C) N.D. -0.3 -0.0 -0.9 -0.2
carbon source Tween 20 (C) N.D. -0.1 -0.5 -0.5 -0.4
carbon source D-Sorbitol (C) N.D. -0.1 -0.1 -0.9 -0.3
carbon source D-Lactate (C) N.D. -0.2 -0.3 -0.4 -0.5
carbon source L-tyrosine (C) N.D. -0.4 -0.3 -0.6 -0.2
phage V1_1 N.D. +0.1 -0.3 -0.5 -0.6
carbon source L-Arabinose (C) N.D. -0.1 -0.1 -0.9 -0.1
phage V1_1 N.D. +0.1 +0.1 -0.7 -0.5
carbon source D,L-Malic Acid (C) N.D. -0.2 -0.6 -0.6 +0.5
carbon source Formate (C) N.D. -0.0 +0.2 -0.5 -0.5
carbon source butyrate (C) N.D. -0.4 +0.1 -0.6 +0.2
carbon source L-Threonine (C) N.D. -0.7 -0.2 +0.3 +0.2
carbon source L-Histidine (C) N.D. -0.3 -0.2 +0.9 +1.3
carbon source L-Histidine (C) N.D. -0.1 -0.3 +1.0 +1.2
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ABID97_RS04015
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ABID97_RS04020
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ABID97_RS04035
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