Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS03730 and ABID97_RS03735 are separated by 13 nucleotidesABID97_RS03735 and ABID97_RS03740 overlap by 4 nucleotidesABID97_RS03740 and ABID97_RS03745 are separated by 105 nucleotidesABID97_RS03745 and ABID97_RS03750 are separated by 16 nucleotides ABID97_RS03730: ABID97_RS03730 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 767,089 to 767,493 _RS03730 ABID97_RS03735: ABID97_RS03735 - extradiol ring-cleavage dioxygenase, at 767,507 to 768,334 _RS03735 ABID97_RS03740: ABID97_RS03740 - aromatic ring-opening dioxygenase subunit LigA, at 768,331 to 768,666 _RS03740 ABID97_RS03745: ABID97_RS03745 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase, at 768,772 to 770,235 _RS03745 ABID97_RS03750: ABID97_RS03750 - tripartite tricarboxylate transporter substrate binding protein, at 770,252 to 771,241 _RS03750
Group Condition ABID97_RS03730 ABID97_RS03735 ABID97_RS03740 ABID97_RS03745 ABID97_RS03750
carbon source propionate (C) -1.0 -0.3 -0.0 -0.0 -0.1
phage V1_10 -0.3 -0.6 -0.5 +0.1 +0.0
carbon source L-Lactate (C) -0.3 +0.0 -0.5 -0.1 -0.3
carbon source 2-Deoxy-D-Ribose (C) -0.3 -0.5 +0.3 -0.1 -0.2
carbon source propionate (C) -0.1 -0.5 -0.3 +0.2 +0.3
carbon source 4-Hydroxybenzoic Acid (C) -0.3 -0.3 +0.4 -0.2 -0.1
carbon source D,L-Malic Acid (C) -0.3 +0.4 -0.3 -0.3 +0.1
carbon source L-Lactate (C) -0.4 +0.3 -0.2 +0.2 -0.2
carbon source D-Glucose (C) +0.4 -0.2 -0.4 +0.2 -0.1
carbon source Glycolic Acid (C) -0.4 -0.1 +0.3 +0.3 -0.1
carbon source D-Ribose (C) +0.7 -0.8 -0.1 +0.1 -0.0
carbon source D-Fructose (C) -0.1 +0.1 +0.5 -0.5 -0.2
r2a outgrowth control R2A outgrowth control -0.4 +0.7 -0.1 -0.2 +0.1
carbon source L-tyrosine (C) +0.8 +0.3 -0.7 -0.2 -0.2
carbon source D,L-Malic Acid (C) +0.4 -0.5 +0.0 +0.2 +0.1
carbon source butyrate (C) +0.5 -0.4 +0.4 -0.2 -0.0
carbon source L-Fucose (C) +0.5 -0.3 +0.3 -0.2 +0.1
carbon source a-Ketoglutaric (C) +0.5 -0.4 +0.1 +0.2 -0.1
carbon source L-Histidine (C) +0.4 +0.6 -0.1 -0.3 -0.0
carbon source butyrate (C) -0.2 +0.1 +0.8 -0.2 +0.1
carbon source D-Xylose (C) +0.3 +0.4 +0.4 -0.1 -0.1
carbon source casaminos (C) +0.5 +0.5 +0.0 -0.2 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +0.4 +0.7 +0.1 -0.1
carbon source D-Serine (C) +0.4 +0.7 -0.3 +0.1 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.5 +0.1 +0.1 +0.0
carbon source D-Arabinose (C) +0.6 +0.1 +0.2 -0.0 +0.4
phage V2_100 +0.5 -0.6 +0.0 +0.9 +0.5
carbon source L-Alanine (C) +0.6 +0.2 +0.4 +0.3 -0.1
carbon source L-Arabinose (C) +1.6 +1.4 +1.7 +1.4 +1.2
carbon source L-Arabinose (C) +1.7 +1.5 +1.6 +1.4 +1.2
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ABID97_RS03730
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ABID97_RS03735
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ABID97_RS03745
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