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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS02920 and ABID97_RS02925 are separated by 40 nucleotides
ABID97_RS02925 and ABID97_RS02930 overlap by 1 nucleotides
ABID97_RS02930 and ABID97_RS02935 are separated by 104 nucleotides
ABID97_RS02935 and ABID97_RS02940 are separated by 75 nucleotides
ABID97_RS02920: ABID97_RS02920 - ParA family protein, at 595,696 to 596,610
_RS02920
ABID97_RS02925: ABID97_RS02925 - alpha/beta hydrolase, at 596,651 to 597,199
_RS02925
ABID97_RS02930: ABID97_RS02930 - ParB/RepB/Spo0J family partition protein, at 597,199 to 598,146
_RS02930
ABID97_RS02935: ABID97_RS02935 - CsgG/HfaB family protein, at 598,251 to 599,147
_RS02935
ABID97_RS02940: ABID97_RS02940 - FAD-linked oxidase C-terminal domain-containing protein, at 599,223 to 600,647
_RS02940
Group
Condition
ABID97
_RS02920
ABID97
_RS02925
ABID97
_RS02930
ABID97
_RS02935
ABID97
_RS02940
carbon source
D-Xylose (C)
N.D.
-0.1
N.D.
+0.0
-1.7
carbon source
D-Xylose (C)
N.D.
+0.0
N.D.
+0.0
-1.6
carbon source
D-Arabinose (C)
N.D.
-0.3
N.D.
+0.1
-1.2
carbon source
D-Arabinose (C)
N.D.
-0.1
N.D.
-0.1
-1.2
carbon source
D-Glucose (C)
N.D.
-0.2
N.D.
-0.2
-0.1
carbon source
Glycolic Acid (C)
N.D.
-0.5
N.D.
+0.0
-0.1
carbon source
butyrate (C)
N.D.
-0.2
N.D.
-0.2
-0.0
carbon source
L-Lactate (C)
N.D.
-0.2
N.D.
-0.2
-0.1
carbon source
D-Sorbitol (C)
N.D.
-0.1
N.D.
-0.2
-0.2
carbon source
L-Tryptophan (C)
N.D.
-0.2
N.D.
-0.1
-0.1
carbon source
L-Histidine (C)
N.D.
-0.1
N.D.
-0.2
-0.1
carbon source
D-Gluconic Acid (C)
N.D.
-0.2
N.D.
-0.1
-0.1
phage
V2_100
N.D.
+0.1
N.D.
-0.2
-0.3
carbon source
D-Galactose (C)
N.D.
-0.4
N.D.
-0.1
+0.0
carbon source
L-Fucose (C)
N.D.
-0.2
N.D.
-0.0
-0.1
carbon source
butyrate (C)
N.D.
-0.0
N.D.
-0.2
-0.1
carbon source
Formate (C)
N.D.
-0.1
N.D.
-0.1
-0.1
carbon source
L-Alanine (C)
N.D.
-0.2
N.D.
-0.0
-0.2
carbon source
L-Histidine (C)
N.D.
+0.0
N.D.
-0.2
-0.2
carbon source
L-Lactate (C)
N.D.
-0.2
N.D.
-0.0
-0.1
carbon source
a-Ketoglutaric (C)
N.D.
-0.3
N.D.
-0.1
+0.1
carbon source
L-Malic (C)
N.D.
-0.2
N.D.
+0.1
-0.1
carbon source
Glycolic Acid (C)
N.D.
-0.2
N.D.
-0.2
+0.2
carbon source
L-Asparagine (C)
N.D.
-0.3
N.D.
+0.2
-0.0
carbon source
Glucuronamide (C)
N.D.
+0.2
N.D.
-0.2
-0.1
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
N.D.
-0.4
N.D.
+0.0
+0.4
carbon source
D-Lactate (C)
N.D.
-0.2
N.D.
+0.0
+0.2
carbon source
L-Phenylalanine (C)
N.D.
-0.2
N.D.
+0.1
+0.3
r2a outgrowth control
R2A outgrowth control
N.D.
+0.3
N.D.
+0.1
-0.1
carbon source
L-Phenylalanine (C)
N.D.
+0.0
N.D.
-0.0
+0.4
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