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Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS02810 and ABID97_RS02815 are separated by 6 nucleotides
ABID97_RS02815 and ABID97_RS02820 overlap by 4 nucleotides
ABID97_RS02820 and ABID97_RS02825 are separated by 125 nucleotides
ABID97_RS02825 and ABID97_RS02830 overlap by 28 nucleotides
ABID97_RS02810: ABID97_RS02810 - TerB family tellurite resistance protein, at 575,696 to 576,655
_RS02810
ABID97_RS02815: ABID97_RS02815 - Cu(I)-responsive transcriptional regulator, at 576,662 to 577,078
_RS02815
ABID97_RS02820: ABID97_RS02820 - cation transporter, at 577,075 to 577,269
_RS02820
ABID97_RS02825: ABID97_RS02825 - heavy metal translocating P-type ATPase, at 577,395 to 579,683
_RS02825
ABID97_RS02830: ABID97_RS02830 - GNAT family N-acetyltransferase, at 579,656 to 580,156
_RS02830
Group
Condition
ABID97
_RS02810
ABID97
_RS02815
ABID97
_RS02820
ABID97
_RS02825
ABID97
_RS02830
carbon source
Adenine (C)
-0.1
+0.2
N.D.
-1.7
-0.2
carbon source
L-Histidine (C)
-0.0
-0.6
N.D.
-0.8
-0.1
carbon source
D-Glucuronic Acid (C)
-0.1
-0.1
N.D.
-1.1
-0.1
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
+0.4
+0.2
N.D.
-2.1
+0.1
carbon source
L-Histidine (C)
-0.0
-0.3
N.D.
-0.9
-0.1
carbon source
L-Phenylalanine (C)
-0.1
-0.3
N.D.
-0.8
-0.1
carbon source
D-Gluconic Acid (C)
-0.1
-0.1
N.D.
-0.9
-0.2
carbon source
2-Deoxy-D-Ribose (C)
-0.0
-0.0
N.D.
-1.0
-0.1
carbon source
a-Ketoglutaric (C)
+0.0
-0.8
N.D.
-0.3
-0.1
carbon source
Adenine (C)
-0.0
-0.1
N.D.
-0.8
-0.1
carbon source
casaminos (C)
-0.1
-0.2
N.D.
-0.6
-0.1
carbon source
2-Deoxy-D-Ribose (C)
-0.0
+0.3
N.D.
-1.3
-0.0
carbon source
L-tyrosine (C)
-0.2
-0.0
N.D.
-0.5
-0.4
carbon source
butyrate (C)
-0.1
-0.7
N.D.
+0.1
-0.2
carbon source
Formate (C)
-0.0
-0.2
N.D.
-0.5
-0.1
carbon source
Ethanol (C)
-0.0
-0.6
N.D.
-0.1
-0.1
carbon source
4-Hydroxybenzoic Acid (C)
-0.0
+0.4
N.D.
-1.0
-0.2
carbon source
D-Gluconic Acid (C)
+0.1
-0.2
N.D.
-0.5
-0.1
carbon source
4-Hydroxybenzoic Acid (C)
+0.1
-0.2
N.D.
-0.7
-0.0
carbon source
Glycolic Acid (C)
+0.1
+0.0
N.D.
-0.7
-0.1
carbon source
butyrate (C)
-0.1
+0.2
N.D.
-0.5
-0.0
carbon source
Glucuronamide (C)
-0.1
-0.2
N.D.
+0.3
-0.3
carbon source
Gly-Glu (C)
+0.1
+0.2
N.D.
-0.5
-0.1
carbon source
D,L-Malic Acid (C)
-0.1
-0.7
N.D.
+0.5
-0.1
carbon source
D-Xylose (C)
+0.1
+0.3
N.D.
-0.5
-0.2
carbon source
L-tyrosine (C)
+0.0
+0.4
N.D.
-0.6
-0.0
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
+0.3
+0.6
N.D.
-1.4
+0.2
carbon source
L-Leucine (C)
+0.1
-0.3
N.D.
+0.3
-0.1
carbon source
D,L-Malic Acid (C)
-0.1
+0.5
N.D.
-0.3
-0.1
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
+0.2
+0.5
N.D.
-0.8
+0.2
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