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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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500 nt
ABID97_RS02765 and ABID97_RS02770 overlap by 20 nucleotides
ABID97_RS02770 and ABID97_RS02775 are separated by 20 nucleotides
ABID97_RS02775 and ABID97_RS02780 are separated by 210 nucleotides
ABID97_RS02780 and ABID97_RS02785 overlap by 4 nucleotides
ABID97_RS02765: ABID97_RS02765 - hypothetical protein, at 563,273 to 563,842
_RS02765
ABID97_RS02770: ABID97_RS02770 - exosortase Q, at 563,823 to 564,752
_RS02770
ABID97_RS02775: ABID97_RS02775 - VIT and VWA domain-containing protein, at 564,773 to 566,848
_RS02775
ABID97_RS02780: ABID97_RS02780 - cell envelope integrity protein CreD, at 567,059 to 568,477
_RS02780
ABID97_RS02785: ABID97_RS02785 - glycoside hydrolase family 3 N-terminal domain-containing protein, at 568,474 to 569,766
_RS02785
Group
Condition
ABID97
_RS02765
ABID97
_RS02770
ABID97
_RS02775
ABID97
_RS02780
ABID97
_RS02785
carbon source
Glucuronamide (C)
-1.0
-0.9
-0.6
-0.7
-0.2
carbon source
D,L-Malic Acid (C)
+0.2
-0.2
-0.8
-1.1
-0.5
r2a outgrowth control
R2A outgrowth control
-0.6
-0.4
-0.4
-0.3
-0.5
carbon source
Adenine (C)
-0.4
-0.3
-0.7
-0.6
-0.1
carbon source
Formate (C)
-0.6
-0.4
-0.5
-0.5
-0.1
carbon source
L-Malic (C)
+0.1
-0.6
-0.7
-0.6
-0.1
carbon source
L-Fucose (C)
-0.4
-0.2
-0.6
-0.9
+0.2
carbon source
succinate (C)
+0.1
-0.3
-0.7
-0.5
-0.4
carbon source
D,L-Malic Acid (C)
-0.3
-0.1
-0.7
-1.1
+0.3
carbon source
casaminos (C)
+0.1
-0.5
-0.7
-0.7
-0.0
carbon source
L-tyrosine (C)
-0.4
-0.8
-0.6
+0.4
-0.2
carbon source
Glucuronamide (C)
+0.3
-0.5
-0.5
-0.6
-0.4
carbon source
acetate (C)
+0.2
-0.6
-0.6
-0.4
-0.1
carbon source
L-Histidine (C)
-0.2
+0.2
-0.5
-0.4
-0.7
carbon source
L-Glutamic (C)
+0.3
-0.1
-0.9
-0.6
-0.2
carbon source
acetate (C)
+0.2
+0.0
-0.9
-0.8
+0.1
carbon source
butyrate (C)
-0.5
+0.6
-1.1
-0.3
-0.1
carbon source
D,L-Lactate (C)
-0.1
+0.4
-0.5
-0.6
-0.3
carbon source
L-Asparagine (C)
+0.4
-0.1
-0.7
-0.4
-0.3
carbon source
L-Glutamic (C)
+0.1
+0.5
-0.6
-0.5
-0.5
carbon source
D,L-Lactate (C)
+0.1
+0.4
-0.5
-0.6
-0.3
carbon source
L-Lactate (C)
+0.0
+0.6
-0.5
-0.8
-0.1
carbon source
L-tyrosine (C)
+0.5
+0.2
-0.7
-0.1
-0.6
carbon source
propionate (C)
-0.1
-0.8
-0.3
-0.1
+0.7
carbon source
L-Phenylalanine (C)
+0.5
+0.2
-0.6
-0.7
-0.1
carbon source
L-Arabinose (C)
+0.1
+0.7
-0.5
-0.5
-0.4
carbon source
L-Fucose (C)
+0.0
+0.3
-0.7
-0.7
+0.5
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
+0.7
-0.6
-0.6
+0.3
phage
V1_10
-0.3
-0.6
+0.5
+0.7
+0.0
phage
V2_10
-0.4
-0.1
+0.7
+0.6
+0.6
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