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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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500 nt
ABID97_RS02230 and ABID97_RS02235 are separated by 27 nucleotides
ABID97_RS02235 and ABID97_RS02240 are separated by 93 nucleotides
ABID97_RS02240 and ABID97_RS02245 are separated by 10 nucleotides
ABID97_RS02245 and ABID97_RS02250 are separated by 205 nucleotides
ABID97_RS02230: ABID97_RS02230 - Stp1/IreP family PP2C-type Ser/Thr phosphatase, at 451,823 to 452,629
_RS02230
ABID97_RS02235: ABID97_RS02235 - TerC family protein, at 452,657 to 453,343
_RS02235
ABID97_RS02240: ABID97_RS02240 - succinate--CoA ligase subunit alpha, at 453,437 to 454,330
_RS02240
ABID97_RS02245: ABID97_RS02245 - ADP-forming succinate--CoA ligase subunit beta, at 454,341 to 455,507
_RS02245
ABID97_RS02250: ABID97_RS02250 - N-acetyl-gamma-glutamyl-phosphate reductase, at 455,713 to 456,636
_RS02250
Group
Condition
ABID97
_RS02230
ABID97
_RS02235
ABID97
_RS02240
ABID97
_RS02245
ABID97
_RS02250
phage
V2_10
-1.5
-0.1
N.D.
N.D.
N.D.
phage
V1_10
-1.4
-0.1
N.D.
N.D.
N.D.
phage
V2_10
-1.1
-0.2
N.D.
N.D.
N.D.
phage
V2_100
-0.8
-0.4
N.D.
N.D.
N.D.
carbon source
D,L-Malic Acid (C)
+0.4
-0.7
N.D.
N.D.
N.D.
carbon source
L-tyrosine (C)
+1.1
-0.1
N.D.
N.D.
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
+0.6
+0.5
N.D.
N.D.
N.D.
carbon source
L-Asparagine (C)
+0.9
+0.3
N.D.
N.D.
N.D.
carbon source
L-Alanine (C)
+0.8
+0.3
N.D.
N.D.
N.D.
carbon source
Adenine (C)
+0.9
+0.4
N.D.
N.D.
N.D.
carbon source
D,L-Lactate (C)
+0.9
+0.3
N.D.
N.D.
N.D.
carbon source
pyruvate (C)
+1.0
+0.3
N.D.
N.D.
N.D.
carbon source
Gly-Glu (C)
+1.0
+0.4
N.D.
N.D.
N.D.
carbon source
Glucuronamide (C)
+1.1
+0.3
N.D.
N.D.
N.D.
carbon source
succinate (C)
+1.3
+0.2
N.D.
N.D.
N.D.
carbon source
L-Glutamine (C)
+1.2
+0.3
N.D.
N.D.
N.D.
carbon source
L-Lactate (C)
+1.1
+0.4
N.D.
N.D.
N.D.
carbon source
butyrate (C)
+1.1
+0.4
N.D.
N.D.
N.D.
carbon source
L-Glutamine (C)
+1.3
+0.3
N.D.
N.D.
N.D.
carbon source
pyruvate (C)
+1.1
+0.5
N.D.
N.D.
N.D.
carbon source
L-Glutamic (C)
+1.3
+0.3
N.D.
N.D.
N.D.
carbon source
L-Lactate (C)
+1.3
+0.3
N.D.
N.D.
N.D.
carbon source
butyrate (C)
+1.4
+0.1
N.D.
N.D.
N.D.
carbon source
D-Arabinose (C)
+1.4
+0.2
N.D.
N.D.
N.D.
carbon source
D-Arabinose (C)
+1.4
+0.3
N.D.
N.D.
N.D.
carbon source
Glucuronamide (C)
+1.3
+0.5
N.D.
N.D.
N.D.
carbon source
L-Glutamic (C)
+1.5
+0.3
N.D.
N.D.
N.D.
carbon source
Glycolic Acid (C)
+0.9
+1.3
N.D.
N.D.
N.D.
carbon source
L-Malic (C)
+2.0
+0.6
N.D.
N.D.
N.D.
carbon source
L-Malic (C)
+1.9
+0.7
N.D.
N.D.
N.D.
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