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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS02170 and ABID97_RS02175 overlap by 4 nucleotides
ABID97_RS02175 and ABID97_RS02180 overlap by 4 nucleotides
ABID97_RS02180 and ABID97_RS02185 are separated by 11 nucleotides
ABID97_RS02185 and ABID97_RS02190 overlap by 4 nucleotides
ABID97_RS02170: ABID97_RS02170 - hypothetical protein, at 437,540 to 438,730
_RS02170
ABID97_RS02175: ABID97_RS02175 - class I SAM-dependent methyltransferase, at 438,727 to 439,575
_RS02175
ABID97_RS02180: ABID97_RS02180 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 439,572 to 440,678
_RS02180
ABID97_RS02185: ABID97_RS02185 - DapH/DapD/GlmU-related protein, at 440,690 to 441,271
_RS02185
ABID97_RS02190: ABID97_RS02190 - Gfo/Idh/MocA family oxidoreductase, at 441,268 to 442,221
_RS02190
Group
Condition
ABID97
_RS02170
ABID97
_RS02175
ABID97
_RS02180
ABID97
_RS02185
ABID97
_RS02190
carbon source
D-Sorbitol (C)
+1.7
+0.8
+0.8
+0.8
+0.8
carbon source
D-Sorbitol (C)
+1.7
+0.8
+0.9
+0.9
+0.7
carbon source
D-Ribose (C)
+1.6
+0.9
+0.7
+0.9
+0.8
carbon source
a-Ketoglutaric (C)
+1.6
+0.5
+1.1
+0.9
+1.0
carbon source
L-Fucose (C)
+1.7
+0.7
+1.0
+1.0
+0.9
carbon source
L-Fucose (C)
+1.5
+0.6
+1.1
+1.2
+1.0
carbon source
L-Threonine (C)
+1.7
+0.7
+1.1
+1.1
+0.9
carbon source
D-Fructose (C)
+1.9
+0.9
+0.8
+1.3
+0.8
carbon source
a-Ketoglutaric (C)
+1.6
+0.6
+1.3
+1.1
+1.2
carbon source
Ethanol (C)
+1.6
+0.7
+1.3
+1.2
+1.3
carbon source
D-Xylose (C)
+1.8
+0.7
+1.4
+0.9
+1.2
carbon source
L-Threonine (C)
+1.7
+0.8
+1.4
+1.4
+1.0
carbon source
D-Xylose (C)
+1.9
+0.7
+1.5
+1.1
+1.3
carbon source
Ethanol (C)
+1.8
+0.7
+1.4
+1.4
+1.3
carbon source
4-Hydroxybenzoic Acid (C)
+1.5
+0.8
+1.3
+2.0
+1.1
carbon source
4-Hydroxybenzoic Acid (C)
+1.7
+1.0
+1.3
+1.9
+1.3
carbon source
L-Tryptophan (C)
+1.9
+0.7
+1.4
+1.7
+1.4
carbon source
L-Phenylalanine (C)
+2.1
+0.9
+1.4
+1.7
+1.4
carbon source
L-Tryptophan (C)
+1.9
+0.9
+1.6
+1.7
+1.5
carbon source
L-tyrosine (C)
+2.6
+1.0
+1.5
+1.3
+1.5
carbon source
2-Deoxy-D-Ribose (C)
+2.7
+1.1
+1.7
+1.4
+1.5
carbon source
2-Deoxy-D-Ribose (C)
+2.6
+1.1
+1.7
+1.5
+1.5
carbon source
L-Phenylalanine (C)
+2.3
+1.0
+1.7
+2.0
+1.6
carbon source
D-Glucose (C)
+2.2
+1.0
+2.4
+1.9
+2.3
carbon source
D-Glucose (C)
+2.2
+0.8
+2.5
+2.1
+2.4
phage
V1_10
-0.0
+1.0
+3.5
+3.5
+3.5
phage
V1_10
+0.0
+1.1
+3.4
+3.5
+3.5
phage
V2_10
+0.1
+1.4
+3.5
+3.6
+3.5
phage
V2_10
+0.1
+1.4
+3.6
+3.7
+3.6
phage
V2_100
+0.3
+2.2
+6.8
+6.9
+6.8
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