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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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500 nt
ABID97_RS02065 and ABID97_RS02070 are separated by 3 nucleotides
ABID97_RS02070 and ABID97_RS02075 are separated by 9 nucleotides
ABID97_RS02075 and ABID97_RS02080 are separated by 485 nucleotides
ABID97_RS02080 and ABID97_RS02085 are separated by 79 nucleotides
ABID97_RS02065: ABID97_RS02065 - YaeQ family protein, at 416,244 to 416,804
_RS02065
ABID97_RS02070: ABID97_RS02070 - DUF2007 domain-containing protein, at 416,808 to 417,113
_RS02070
ABID97_RS02075: ABID97_RS02075 - DUF3717 domain-containing protein, at 417,123 to 417,587
_RS02075
ABID97_RS02080: ABID97_RS02080 - TerC family protein, at 418,073 to 418,819
_RS02080
ABID97_RS02085: ABID97_RS02085 - hypothetical protein, at 418,899 to 419,363
_RS02085
Group
Condition
ABID97
_RS02065
ABID97
_RS02070
ABID97
_RS02075
ABID97
_RS02080
ABID97
_RS02085
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
N.D.
-1.6
N.D.
N.D.
carbon source
L-tyrosine (C)
-0.5
N.D.
-0.7
N.D.
N.D.
carbon source
D,L-Malic Acid (C)
-0.3
N.D.
-0.7
N.D.
N.D.
carbon source
butyrate (C)
-0.3
N.D.
-0.5
N.D.
N.D.
carbon source
butyrate (C)
+0.2
N.D.
-0.8
N.D.
N.D.
carbon source
Fumarate (C)
-0.4
N.D.
-0.2
N.D.
N.D.
carbon source
L-Malic (C)
-0.2
N.D.
-0.3
N.D.
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
+0.3
N.D.
-0.7
N.D.
N.D.
phage
V2_100
+0.2
N.D.
-0.7
N.D.
N.D.
r2a outgrowth control
R2A outgrowth control
+0.0
N.D.
-0.4
N.D.
N.D.
phage
V2_10
+0.1
N.D.
-0.4
N.D.
N.D.
phage
V1_10
+0.1
N.D.
-0.3
N.D.
N.D.
carbon source
Glucuronamide (C)
+0.1
N.D.
-0.3
N.D.
N.D.
carbon source
L-Alanine (C)
+0.2
N.D.
-0.3
N.D.
N.D.
carbon source
succinate (C)
-0.3
N.D.
+0.3
N.D.
N.D.
carbon source
D-Glucose (C)
-0.2
N.D.
+0.3
N.D.
N.D.
carbon source
Glucuronamide (C)
+0.4
N.D.
-0.1
N.D.
N.D.
carbon source
L-Arabinose (C)
+0.4
N.D.
-0.1
N.D.
N.D.
phage
V1_1
+0.3
N.D.
+0.2
N.D.
N.D.
carbon source
D-Serine (C)
-0.0
N.D.
+0.5
N.D.
N.D.
carbon source
2-Deoxy-D-Ribose (C)
+0.0
N.D.
+0.5
N.D.
N.D.
carbon source
acetate (C)
+0.2
N.D.
+0.4
N.D.
N.D.
carbon source
L-Histidine (C)
+0.4
N.D.
+0.2
N.D.
N.D.
carbon source
L-Histidine (C)
+0.2
N.D.
+0.4
N.D.
N.D.
carbon source
2-Deoxy-D-Ribose (C)
-0.0
N.D.
+0.6
N.D.
N.D.
carbon source
Gly-Glu (C)
+0.1
N.D.
+0.5
N.D.
N.D.
carbon source
Tween 20 (C)
+0.3
N.D.
+0.4
N.D.
N.D.
carbon source
D-Glucuronic Acid (C)
+0.1
N.D.
+0.7
N.D.
N.D.
carbon source
D-Fructose (C)
+0.2
N.D.
+0.7
N.D.
N.D.
carbon source
D-Fructose (C)
+0.4
N.D.
+0.8
N.D.
N.D.
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