Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS01985 and ABID97_RS01990 are separated by 14 nucleotidesABID97_RS01990 and ABID97_RS01995 are separated by 40 nucleotidesABID97_RS01995 and ABID97_RS02000 are separated by 2 nucleotidesABID97_RS02000 and ABID97_RS02005 overlap by 4 nucleotides ABID97_RS01985: ABID97_RS01985 - OmpA family protein, at 394,934 to 395,595 _RS01985 ABID97_RS01990: ABID97_RS01990 - response regulator, at 395,610 to 396,236 _RS01990 ABID97_RS01995: ABID97_RS01995 - PAS domain S-box protein, at 396,277 to 398,325 _RS01995 ABID97_RS02000: ABID97_RS02000 - carbon-nitrogen hydrolase family protein, at 398,328 to 399,143 _RS02000 ABID97_RS02005: ABID97_RS02005 - YhdP family protein, at 399,140 to 403,003 _RS02005
Group Condition ABID97_RS01985 ABID97_RS01990 ABID97_RS01995 ABID97_RS02000 ABID97_RS02005
carbon source Tween 20 (C) -0.2 N.D. -0.1 -0.3 -1.2
carbon source L-Histidine (C) -0.3 N.D. +0.1 -0.6 -0.4
carbon source D-Glucuronic Acid (C) -0.4 N.D. -0.2 -0.7 +0.0
carbon source L-Histidine (C) -0.3 N.D. -0.1 -0.5 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 N.D. -0.2 -0.1 -0.6
carbon source L-tyrosine (C) -0.3 N.D. -0.3 -0.2 -0.1
carbon source D-Glucose (C) -0.1 N.D. -0.2 -0.4 -0.2
carbon source L-Proline (C) -0.6 N.D. -0.0 -0.4 +0.0
carbon source D-Glucose (C) -0.2 N.D. -0.1 -0.4 -0.3
carbon source casaminos (C) -0.4 N.D. -0.2 -0.3 +0.0
carbon source L-Tryptophan (C) -0.1 N.D. -0.2 -0.4 -0.2
carbon source L-Phenylalanine (C) -0.3 N.D. -0.0 -0.1 -0.5
carbon source 2-Deoxy-D-Ribose (C) -0.4 N.D. -0.1 -0.4 +0.0
carbon source D-Gluconic Acid (C) -0.4 N.D. +0.0 -0.4 -0.1
carbon source D-Xylose (C) -0.3 N.D. +0.1 -0.4 -0.0
carbon source 4-Hydroxybenzoic Acid (C) -0.4 N.D. +0.1 -0.2 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 N.D. -0.1 -0.4 -0.3
carbon source D-Galactose (C) -0.9 N.D. +0.0 +0.1 +0.1
carbon source L-Phenylalanine (C) -0.2 N.D. +0.2 -0.2 -0.5
carbon source D-Xylose (C) -0.6 N.D. +0.1 -0.1 -0.0
carbon source Ethanol (C) -0.6 N.D. +0.1 -0.3 +0.1
carbon source Tween 20 (C) +0.2 N.D. +0.1 +0.0 -0.8
carbon source Formate (C) -0.5 N.D. -0.1 -0.1 +0.2
carbon source propionate (C) -0.9 N.D. +0.4 -0.1 +0.2
phage V2_100 +0.2 N.D. -0.2 +0.1 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.2 N.D. -0.0 -1.0 -0.5
carbon source acetate (C) -0.5 N.D. +0.1 +0.2 -0.1
plant outgrowth control Plant outgrowth control -0.2 N.D. +0.2 -0.4 +0.2
carbon source D,L-Malic Acid (C) -0.5 N.D. +0.2 +0.2 +0.4
carbon source butyrate (C) -0.3 N.D. +0.1 +0.1 +0.4
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ABID97_RS01985
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ABID97_RS01990
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ABID97_RS02000
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ABID97_RS02005
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