Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS01940 and ABID97_RS01945 are separated by 20 nucleotidesABID97_RS01945 and ABID97_RS01950 overlap by 8 nucleotidesABID97_RS01950 and ABID97_RS01955 are separated by 184 nucleotidesABID97_RS01955 and ABID97_RS01960 are separated by 69 nucleotides ABID97_RS01940: ABID97_RS01940 - D-erythronate dehydrogenase, at 383,496 to 384,512 _RS01940 ABID97_RS01945: ABID97_RS01945 - L-threonate dehydrogenase, at 384,533 to 385,477 _RS01945 ABID97_RS01950: ABID97_RS01950 - MFS transporter, at 385,470 to 386,756 _RS01950 ABID97_RS01955: ABID97_RS01955 - FadR/GntR family transcriptional regulator, at 386,941 to 387,717 _RS01955 ABID97_RS01960: ABID97_RS01960 - alpha-ketoglutarate dehydrogenase, at 387,787 to 390,455 _RS01960
Group Condition ABID97_RS01940 ABID97_RS01945 ABID97_RS01950 ABID97_RS01955 ABID97_RS01960
carbon source L-Phenylalanine (C) -0.5 -0.9 -0.5 -5.4 +0.1
carbon source L-Phenylalanine (C) -0.3 -0.9 -0.5 -4.0 -0.0
carbon source L-Threonine (C) -0.3 +0.1 +0.1 +0.1 -4.5
carbon source L-Threonine (C) +0.1 +0.0 -0.0 +0.1 -4.6
carbon source D-Glucuronic Acid (C) -0.2 -0.5 -0.1 -3.4 +0.1
carbon source D,L-Malic Acid (C) +0.2 -0.2 -0.1 -3.3 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -0.1 +0.4 -0.2 -0.2
carbon source Glucuronamide (C) -0.5 -0.4 +0.0 +0.1 -0.1
carbon source L-Malic (C) -0.6 +0.2 -0.1 -0.3 +0.0
carbon source L-Tryptophan (C) -0.6 +0.2 -0.1 -0.3 +0.1
carbon source L-Histidine (C) +0.0 +0.3 -0.2 -0.9 +0.2
carbon source Formate (C) -0.3 +0.3 -0.2 -0.4 +0.0
carbon source D-Glucose (C) -0.6 +0.2 -0.3 +0.0 +0.1
carbon source pyruvate (C) -0.2 +0.2 +0.2 -0.5 -0.1
phage V2_10 +0.4 -0.4 -0.1 +0.1 +0.1
carbon source Adenine (C) +0.1 +0.5 +0.1 -0.4 -0.1
phage V2_100 +0.7 -0.5 -0.2 +0.1 +0.3
carbon source D,L-Lactate (C) +0.2 -0.1 +0.1 +0.9 +0.1
carbon source a-Ketoglutaric (C) +0.1 -0.2 +0.0 +1.2 -0.0
carbon source L-Asparagine (C) -0.3 -0.1 -0.2 +1.8 -0.0
carbon source a-Ketoglutaric (C) +0.2 +0.1 +0.0 +1.1 +0.0
carbon source butyrate (C) -0.0 +0.0 +0.1 +1.5 +0.2
carbon source L-Asparagine (C) -0.4 +0.1 -0.1 +2.3 -0.0
carbon source butyrate (C) -0.1 +0.4 +0.1 +1.4 +0.1
carbon source D-Arabinose (C) -0.2 -0.3 -0.0 +2.7 -0.0
carbon source D-Gluconic Acid (C) +0.1 +0.1 -0.1 +2.1 +0.0
carbon source D-Gluconic Acid (C) +0.2 +0.2 +0.1 +1.9 -0.0
carbon source D-Arabinose (C) -0.2 -0.0 -0.1 +3.2 +0.0
carbon source D-Ribose (C) -1.2 +0.7 +0.5 +3.0 +0.2
carbon source D-Ribose (C) -0.8 +0.6 +0.6 +3.0 -0.1
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ABID97_RS01940
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ABID97_RS01945
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