Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS01590 and ABID97_RS01595 are separated by 11 nucleotidesABID97_RS01595 and ABID97_RS01600 are separated by 20 nucleotidesABID97_RS01600 and ABID97_RS01605 are separated by 153 nucleotidesABID97_RS01605 and ABID97_RS01610 are separated by 74 nucleotides ABID97_RS01590: ABID97_RS01590 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 313,525 to 314,571 _RS01590 ABID97_RS01595: ABID97_RS01595 - tRNA guanosine(34) transglycosylase Tgt, at 314,583 to 315,755 _RS01595 ABID97_RS01600: ABID97_RS01600 - hypothetical protein, at 315,776 to 316,132 _RS01600 ABID97_RS01605: ABID97_RS01605 - SDR family oxidoreductase, at 316,286 to 317,074 _RS01605 ABID97_RS01610: ABID97_RS01610 - DUF3597 domain-containing protein, at 317,149 to 317,535 _RS01610
Group Condition ABID97_RS01590 ABID97_RS01595 ABID97_RS01600 ABID97_RS01605 ABID97_RS01610
carbon source D-Xylose (C) -0.5 -0.7 +0.5 -4.8 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.2 -3.5 +0.9 -0.3 +0.0
carbon source D-Xylose (C) -0.9 -0.9 +0.2 -3.3 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.4 -1.2 +0.2 -0.2 +0.2
carbon source D-Glucose (C) -0.6 -1.0 -1.0 -0.2 -0.3
carbon source L-Proline (C) -0.8 -1.0 -0.5 +0.0 -0.6
carbon source D-Arabinose (C) -1.3 -1.6 -0.2 -0.0 +0.2
carbon source L-Proline (C) -0.8 -1.0 -0.3 -0.2 -0.3
carbon source D-Gluconic Acid (C) -0.7 -1.5 -0.0 -0.1 -0.4
carbon source L-Leucine (C) -0.6 -1.9 +0.0 +0.1 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.7 -1.4 +0.3 +0.3 +0.0
carbon source Tween 20 (C) -1.0 -1.3 -0.4 +0.1 +0.1
carbon source D-Glucuronic Acid (C) -0.9 -0.9 -0.2 -0.3 -0.0
carbon source Fumarate (C) -0.6 -0.9 -0.3 -0.1 -0.3
carbon source L-Threonine (C) -0.8 -1.1 -0.1 -0.4 +0.1
carbon source D-Gluconic Acid (C) -0.8 -1.4 +0.1 -0.0 -0.1
carbon source Glycolic Acid (C) -0.8 -1.5 -0.0 +0.2 +0.0
carbon source Tween 20 (C) -0.5 -1.2 +0.2 -0.3 -0.1
carbon source L-Leucine (C) -0.7 -1.5 +0.2 +0.2 -0.1
carbon source L-Arabinose (C) -0.9 -0.8 -0.3 +0.4 -0.2
carbon source Glycolic Acid (C) -1.1 -1.3 +0.3 +0.4 +0.0
carbon source Formate (C) -0.9 -0.8 +0.2 +0.3 -0.4
carbon source D-Ribose (C) -0.8 -0.8 -0.3 +0.4 +0.0
carbon source Glucuronamide (C) -0.7 -0.7 -0.7 +1.0 +0.0
carbon source L-Histidine (C) -0.5 -1.3 +0.0 +0.7 +0.3
carbon source Glucuronamide (C) -0.8 -0.7 -0.3 +0.9 +0.1
carbon source D,L-Malic Acid (C) +0.2 -0.8 -0.7 +0.6 +0.2
carbon source L-Arabinose (C) -0.3 -1.0 +0.3 +0.3 +0.3
carbon source Adenine (C) -2.5 +4.4 -0.6 -0.3 +0.0
carbon source Adenine (C) -2.6 +5.7 -0.1 -0.2 +0.2
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