Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS01390 and ABID97_RS01395 are separated by 12 nucleotidesABID97_RS01395 and ABID97_RS01400 are separated by 7 nucleotidesABID97_RS01400 and ABID97_RS01405 are separated by 117 nucleotidesABID97_RS01405 and ABID97_RS01410 are separated by 63 nucleotides ABID97_RS01390: ABID97_RS01390 - transketolase C-terminal domain-containing protein, at 281,525 to 282,481 _RS01390 ABID97_RS01395: ABID97_RS01395 - MarR family transcriptional regulator, at 282,494 to 282,916 _RS01395 ABID97_RS01400: ABID97_RS01400 - SDR family oxidoreductase, at 282,924 to 283,685 _RS01400 ABID97_RS01405: ABID97_RS01405 - LysR family transcriptional regulator, at 283,803 to 284,729 _RS01405 ABID97_RS01410: ABID97_RS01410 - tripartite tricarboxylate transporter substrate binding protein, at 284,793 to 285,806 _RS01410
Group Condition ABID97_RS01390 ABID97_RS01395 ABID97_RS01400 ABID97_RS01405 ABID97_RS01410
phage V2_100 -0.6 -0.4 +0.3 -0.2 -0.2
carbon source L-Fucose (C) +0.3 -0.6 -0.7 +0.0 +0.0
carbon source L-Threonine (C) +0.0 +0.0 -0.3 -0.5 -0.2
carbon source L-Asparagine (C) -0.1 -0.3 -0.3 -0.2 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.4 -0.4 +0.1 +0.0
carbon source Adenine (C) +0.2 -0.3 -0.3 -0.2 -0.2
carbon source L-Alanine (C) +0.1 +0.1 -0.5 -0.5 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.4 -0.3 -0.1 +0.0
carbon source L-Alanine (C) +0.2 -0.3 -0.4 -0.2 +0.0
carbon source L-Fucose (C) +0.3 -0.3 -0.1 -0.3 -0.2
carbon source D-Serine (C) +0.1 +0.3 -0.6 -0.2 -0.2
carbon source L-tyrosine (C) +0.0 +0.3 +0.1 -0.8 -0.2
carbon source D,L-Malic Acid (C) -0.1 +0.4 -0.2 -0.4 +0.0
carbon source D-Glucose (C) +0.2 -0.6 +0.1 -0.1 +0.1
carbon source L-tyrosine (C) -0.1 +0.4 +0.2 -0.6 -0.2
carbon source L-Histidine (C) +0.4 -0.1 -0.4 +0.1 +0.0
carbon source Tween 20 (C) +0.1 +0.2 +0.4 -0.6 -0.1
carbon source Glucuronamide (C) +0.5 +0.1 -0.3 -0.2 +0.1
carbon source pyruvate (C) -0.0 +0.4 +0.3 -0.2 -0.1
carbon source pyruvate (C) +0.2 +0.2 +0.3 -0.2 -0.1
carbon source Fumarate (C) +0.2 +0.5 -0.3 -0.0 +0.1
carbon source D-Mannose (C) +0.6 -0.2 -0.1 +0.2 +0.0
carbon source L-Tryptophan (C) -0.0 -0.2 +0.5 -0.1 +0.3
carbon source Glycolic Acid (C) -0.2 +0.7 +0.4 -0.4 +0.0
carbon source acetate (C) -0.2 +0.6 +0.2 -0.1 +0.1
carbon source Formate (C) -0.1 +0.4 +0.2 +0.2 -0.1
carbon source L-Phenylalanine (C) +0.4 +0.4 -0.2 +0.1 +0.0
r2a outgrowth control R2A outgrowth control +0.1 +0.5 +0.4 +0.1 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.1 +0.3 +0.5 +0.2
carbon source 4-Hydroxybenzoic Acid (C) +0.3 +0.3 +0.2 +0.0 +0.4
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ABID97_RS01390
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ABID97_RS01395
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