Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS01225 and ABID97_RS01230 are separated by 9 nucleotidesABID97_RS01230 and ABID97_RS01235 are separated by 67 nucleotidesABID97_RS01235 and ABID97_RS01240 are separated by 209 nucleotidesABID97_RS01240 and ABID97_RS01245 overlap by 4 nucleotides ABID97_RS01225: ABID97_RS01225 - VOC family protein, at 251,632 to 252,063 _RS01225 ABID97_RS01230: ABID97_RS01230 - amino acid ABC transporter substrate-binding protein, at 252,073 to 252,987 _RS01230 ABID97_RS01235: ABID97_RS01235 - LysR family transcriptional regulator, at 253,055 to 253,993 _RS01235 ABID97_RS01240: ABID97_RS01240 - biotin carboxylase N-terminal domain-containing protein, at 254,203 to 255,612 _RS01240 ABID97_RS01245: ABID97_RS01245 - 5-oxoprolinase subunit PxpB, at 255,609 to 256,355 _RS01245
Group Condition ABID97_RS01225 ABID97_RS01230 ABID97_RS01235 ABID97_RS01240 ABID97_RS01245
carbon source D,L-Malic Acid (C) -0.1 -0.1 -0.2 -0.8 +0.1
carbon source Glycerol (C) -0.5 -0.2 -0.4 -0.2 +0.1
r2a outgrowth control R2A outgrowth control -0.5 +0.2 -0.5 -0.1 -0.1
carbon source D-Serine (C) -0.5 -0.0 +0.1 -0.5 +0.0
carbon source D-Glucose (C) -0.3 -0.2 -0.6 +0.2 +0.1
phage V2_10 -0.5 +0.1 -0.5 -0.1 +0.1
carbon source L-Fucose (C) -0.7 -0.0 +0.3 -0.1 -0.2
r2a outgrowth control R2A outgrowth control -0.5 -0.0 -0.1 +0.3 -0.3
carbon source D,L-Malic Acid (C) -0.7 -0.3 +0.0 +0.1 +0.1
carbon source Adenine (C) -0.4 -0.1 +0.4 -0.5 -0.1
carbon source D-Mannose (C) -0.5 +0.1 -0.3 +0.1 -0.1
carbon source Glucuronamide (C) -0.5 +0.4 -0.5 +0.2 +0.2
carbon source D-Sorbitol (C) -0.6 -0.1 -0.0 -0.1 +0.5
carbon source Fumarate (C) -0.3 +0.1 -0.1 +0.4 -0.1
phage V1_1 +0.5 +0.0 -0.4 +0.1 -0.1
carbon source L-Histidine (C) -0.4 -0.0 -0.1 +0.6 -0.1
carbon source L-Arabinose (C) -0.5 +0.1 +0.0 +0.5 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.0 -0.1 +0.8 +0.2
phage V2_100 +0.5 +0.1 -0.0 -0.4 +0.2
carbon source L-Proline (C) -0.3 -0.2 +0.3 +0.5 +0.4
carbon source casaminos (C) -0.5 +0.1 +0.4 +0.5 +0.2
carbon source Tween 20 (C) +0.4 -0.2 +0.1 +0.4 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 +0.3 +0.1 +0.8 +0.3
carbon source L-tyrosine (C) -0.2 +0.0 +0.4 +0.1 +0.5
carbon source L-Phenylalanine (C) +0.0 +0.1 +0.1 +0.3 +0.4
carbon source propionate (C) +0.2 -0.1 +0.2 +0.1 +0.7
carbon source D-Mannose (C) +0.4 +0.3 +0.2 +0.4 +0.0
carbon source propionate (C) +0.6 +0.1 +0.3 +0.2 +0.1
carbon source L-Histidine (C) +0.1 +0.2 +0.3 +0.1 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.9 -0.4 +0.8 -0.2
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ABID97_RS01225
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