Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS01155 and ABID97_RS01160 are separated by 142 nucleotidesABID97_RS01160 and ABID97_RS01165 are separated by 40 nucleotidesABID97_RS01165 and ABID97_RS01170 are separated by 1 nucleotidesABID97_RS01170 and ABID97_RS01175 are separated by 9 nucleotides ABID97_RS01155: ABID97_RS01155 - membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family, at 235,936 to 238,380 _RS01155 ABID97_RS01160: ABID97_RS01160 - ROK family transcriptional regulator, at 238,523 to 239,683 _RS01160 ABID97_RS01165: ABID97_RS01165 - ATP-binding cassette domain-containing protein, at 239,724 to 240,500 _RS01165 ABID97_RS01170: ABID97_RS01170 - ABC transporter permease, at 240,502 to 241,692 _RS01170 ABID97_RS01175: ABID97_RS01175 - D-xylose ABC transporter substrate-binding protein, at 241,702 to 242,724 _RS01175
Group Condition ABID97_RS01155 ABID97_RS01160 ABID97_RS01165 ABID97_RS01170 ABID97_RS01175
carbon source D-Xylose (C) -0.1 -0.0 -2.2 -2.2 -2.1
carbon source D-Glucose (C) -0.2 +4.5 -3.7 -3.0 -3.9
carbon source D-Xylose (C) -0.0 +0.4 -2.0 -1.9 -1.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -1.3 -1.4 -0.7 -0.9
carbon source D-Glucose (C) -0.1 +4.6 -2.6 -2.9 -2.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.1 -0.9 -0.8 -1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.3 -0.8 -0.5 -1.0
carbon source D-Mannose (C) -0.4 +0.5 -0.6 -0.3 -0.0
carbon source L-tyrosine (C) -0.1 +0.1 -0.6 -0.2 +0.4
carbon source L-Histidine (C) +0.2 -0.9 +0.1 +0.2 +0.2
carbon source L-Leucine (C) -0.1 -0.7 +0.3 +0.1 +0.3
carbon source L-Alanine (C) +0.1 -0.9 +0.4 +0.2 +0.1
carbon source acetate (C) +0.1 -0.8 +0.3 +0.1 +0.3
carbon source D,L-Malic Acid (C) +0.1 -0.9 +0.2 +0.3 +0.3
carbon source Ethanol (C) +0.2 -0.7 +0.3 +0.1 +0.2
carbon source 2-Deoxy-D-Ribose (C) -0.2 -0.1 -0.2 -0.2 +1.0
carbon source Formate (C) +0.2 -0.5 -0.2 +0.4 +0.5
carbon source propionate (C) +0.2 -0.6 +0.1 +0.4 +0.3
carbon source D-Gluconic Acid (C) +0.0 +1.6 -0.3 -0.3 -0.5
phage V2_100 +0.4 -0.7 -0.1 +0.6 +0.5
carbon source D-Gluconic Acid (C) -0.0 +2.0 -0.5 -0.3 -0.6
carbon source L-Arabinose (C) +0.2 -0.4 +0.5 +0.1 +0.2
carbon source 4-Hydroxybenzoic Acid (C) +0.0 -1.0 +0.7 +0.6 +0.8
carbon source propionate (C) -0.2 +0.4 +0.8 +0.1 +0.5
carbon source L-Fucose (C) +0.0 +0.7 +0.6 -0.1 +0.3
carbon source 4-Hydroxybenzoic Acid (C) +0.0 -0.3 +0.6 +0.7 +0.7
carbon source D-Serine (C) +0.1 +0.7 +0.5 +0.3 +0.6
carbon source L-tyrosine (C) +0.0 +0.4 +0.4 +0.0 +1.2
carbon source Glucuronamide (C) +0.3 -0.7 +3.2 +3.1 +3.1
carbon source Glucuronamide (C) +0.2 -0.8 +3.6 +3.3 +3.4
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