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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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500 nt
ABID97_RS00710 and ABID97_RS00715 are separated by 14 nucleotides
ABID97_RS00715 and ABID97_RS00720 are separated by 399 nucleotides
ABID97_RS00720 and ABID97_RS00725 are separated by 66 nucleotides
ABID97_RS00725 and ABID97_RS00730 are separated by 90 nucleotides
ABID97_RS00710: ABID97_RS00710 - VanZ family protein, at 141,517 to 142,632
_RS00710
ABID97_RS00715: ABID97_RS00715 - CopD family protein, at 142,647 to 143,075
_RS00715
ABID97_RS00720: ABID97_RS00720 - porphobilinogen synthase, at 143,475 to 144,464
_RS00720
ABID97_RS00725: ABID97_RS00725 - magnesium transporter CorA family protein, at 144,531 to 145,691
_RS00725
ABID97_RS00730: ABID97_RS00730 - DUF4148 domain-containing protein, at 145,782 to 146,150
_RS00730
Group
Condition
ABID97
_RS00710
ABID97
_RS00715
ABID97
_RS00720
ABID97
_RS00725
ABID97
_RS00730
carbon source
4-Hydroxybenzoic Acid (C)
-0.3
N.D.
N.D.
-1.1
-2.7
carbon source
4-Hydroxybenzoic Acid (C)
-0.2
N.D.
N.D.
-0.8
-1.2
carbon source
L-Histidine (C)
-0.7
N.D.
N.D.
-0.8
-0.4
carbon source
Formate (C)
-0.2
N.D.
N.D.
-0.5
-0.5
carbon source
Ethanol (C)
-0.1
N.D.
N.D.
-0.2
-0.9
carbon source
D-Gluconic Acid (C)
-0.5
N.D.
N.D.
-0.4
-0.3
carbon source
D,L-Malic Acid (C)
-0.6
N.D.
N.D.
-0.2
-0.4
carbon source
L-Phenylalanine (C)
-0.6
N.D.
N.D.
-0.1
-0.4
carbon source
L-Tryptophan (C)
-0.2
N.D.
N.D.
-0.3
-0.6
carbon source
D-Lactate (C)
-0.3
N.D.
N.D.
-0.3
-0.6
carbon source
D,L-Lactate (C)
-0.4
N.D.
N.D.
-0.3
-0.5
carbon source
D-Xylose (C)
-0.3
N.D.
N.D.
-0.2
-0.6
carbon source
Glucuronamide (C)
-0.3
N.D.
N.D.
-0.8
+0.1
carbon source
Gly-Glu (C)
-0.4
N.D.
N.D.
-0.3
-0.3
carbon source
succinate (C)
-0.4
N.D.
N.D.
-0.2
-0.4
carbon source
propionate (C)
-0.2
N.D.
N.D.
+0.0
-0.8
carbon source
2-Deoxy-D-Ribose (C)
-0.2
N.D.
N.D.
-0.2
-0.6
carbon source
L-Tryptophan (C)
-0.3
N.D.
N.D.
-0.5
-0.2
carbon source
Glycolic Acid (C)
-0.5
N.D.
N.D.
-0.2
-0.3
carbon source
L-Leucine (C)
-0.5
N.D.
N.D.
-0.2
-0.3
carbon source
D-Glucose (C)
-0.4
N.D.
N.D.
-0.2
-0.4
carbon source
Glycolic Acid (C)
-0.3
N.D.
N.D.
-0.2
-0.4
carbon source
D-Mannose (C)
-0.3
N.D.
N.D.
-0.3
-0.3
carbon source
Ethanol (C)
-0.4
N.D.
N.D.
-0.2
-0.3
carbon source
L-Asparagine (C)
-0.4
N.D.
N.D.
-0.1
-0.4
carbon source
Fumarate (C)
-0.3
N.D.
N.D.
-0.1
-0.5
carbon source
L-Proline (C)
-0.3
N.D.
N.D.
-0.3
-0.3
phage
V2_100
+0.6
N.D.
N.D.
+0.1
-1.2
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-0.1
N.D.
N.D.
+0.2
-0.6
phage
V2_10
+0.5
N.D.
N.D.
+0.2
-0.2
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