Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS00310 and ABID97_RS00315 are separated by 43 nucleotidesABID97_RS00315 and ABID97_RS00320 are separated by 176 nucleotidesABID97_RS00320 and ABID97_RS00325 are separated by 16 nucleotidesABID97_RS00325 and ABID97_RS00330 overlap by 4 nucleotides ABID97_RS00310: ABID97_RS00310 - tRNA-Arg, at 70,428 to 70,502 _RS00310 ABID97_RS00315: ABID97_RS00315 - TetR family transcriptional regulator, at 70,546 to 71,220 _RS00315 ABID97_RS00320: ABID97_RS00320 - efflux RND transporter periplasmic adaptor subunit, at 71,397 to 72,686 _RS00320 ABID97_RS00325: ABID97_RS00325 - efflux RND transporter permease subunit, at 72,703 to 75,864 _RS00325 ABID97_RS00330: ABID97_RS00330 - efflux transporter outer membrane subunit, at 75,861 to 77,285 _RS00330
Group Condition ABID97_RS00310 ABID97_RS00315 ABID97_RS00320 ABID97_RS00325 ABID97_RS00330
carbon source Tween 20 (C) N.D. +1.0 -3.3 -3.3 -1.7
carbon source Tween 20 (C) N.D. +0.8 -3.2 -2.9 -1.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -2.0 +0.2 +0.1 -0.1
carbon source D,L-Malic Acid (C) N.D. -1.8 +0.2 -0.1 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.8 -0.2 -0.2 -0.2
carbon source L-Histidine (C) N.D. +0.5 -0.5 -0.5 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.4 +0.1 +0.0 +0.2
carbon source 4-Hydroxybenzoic Acid (C) N.D. -0.9 -0.2 +0.1 +0.1
carbon source L-Tryptophan (C) N.D. -0.9 +0.0 +0.0 +0.0
phage V1_10 N.D. -0.7 +0.1 -0.0 +0.0
carbon source Glycolic Acid (C) N.D. -0.7 +0.0 +0.1 -0.0
carbon source L-Histidine (C) N.D. +0.6 -0.4 -0.6 -0.2
carbon source D-Glucuronic Acid (C) N.D. -0.8 +0.1 +0.3 -0.0
carbon source L-tyrosine (C) N.D. -0.2 -0.1 +0.3 -0.4
plant outgrowth control Plant outgrowth control N.D. -0.6 +0.1 +0.1 +0.0
carbon source Gly-Glu (C) N.D. -0.5 +0.1 +0.1 +0.1
carbon source L-Tryptophan (C) N.D. -0.6 +0.3 +0.2 -0.1
carbon source 4-Hydroxybenzoic Acid (C) N.D. -0.4 +0.2 +0.2 -0.1
carbon source a-Ketoglutaric (C) N.D. -0.3 +0.2 +0.2 -0.1
carbon source L-Malic (C) N.D. -0.3 +0.2 +0.1 -0.1
carbon source L-Asparagine (C) N.D. -0.4 +0.1 +0.1 +0.2
carbon source L-Lactate (C) N.D. -0.3 +0.1 +0.2 +0.2
carbon source D-Gluconic Acid (C) N.D. -0.2 +0.2 +0.2 +0.1
carbon source a-Ketoglutaric (C) N.D. -0.3 +0.2 +0.2 +0.2
carbon source L-Alanine (C) N.D. -0.8 +0.5 +0.6 +0.2
carbon source Adenine (C) N.D. +0.7 +0.0 -0.2 -0.1
carbon source L-Alanine (C) N.D. -0.7 +0.6 +0.5 +0.2
carbon source butyrate (C) N.D. +1.1 -0.1 -0.1 -0.1
carbon source Glucuronamide (C) N.D. +0.5 +0.2 +0.0 +0.1
carbon source butyrate (C) N.D. +1.3 -0.2 -0.2 -0.0
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