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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS00180 and ABID97_RS00185 are separated by 47 nucleotides
ABID97_RS00185 and ABID97_RS00190 are separated by 25 nucleotides
ABID97_RS00190 and ABID97_RS00195 are separated by 13 nucleotides
ABID97_RS00195 and ABID97_RS00200 overlap by 4 nucleotides
ABID97_RS00180: ABID97_RS00180 - DUF805 domain-containing protein, at 42,990 to 43,544
_RS00180
ABID97_RS00185: ABID97_RS00185 - DUF58 domain-containing protein, at 43,592 to 44,953
_RS00185
ABID97_RS00190: ABID97_RS00190 - MoxR family ATPase, at 44,979 to 45,974
_RS00190
ABID97_RS00195: ABID97_RS00195 - DUF4350 domain-containing protein, at 45,988 to 47,241
_RS00195
ABID97_RS00200: ABID97_RS00200 - DUF4129 domain-containing protein, at 47,238 to 48,020
_RS00200
Group
Condition
ABID97
_RS00180
ABID97
_RS00185
ABID97
_RS00190
ABID97
_RS00195
ABID97
_RS00200
carbon source
D,L-Malic Acid (C)
-0.0
-0.3
+0.3
-0.0
-1.3
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
-0.3
-0.1
-0.4
-0.1
carbon source
Fumarate (C)
+0.0
-0.1
-0.5
-0.2
-0.1
carbon source
L-Alanine (C)
-0.2
+0.1
-0.2
+0.1
-0.6
phage
V2_100
+0.0
+0.2
-0.5
-0.1
-0.3
carbon source
Glycerol (C)
-0.1
-0.1
-0.1
+0.2
-0.5
carbon source
Fumarate (C)
-0.1
+0.2
-0.3
-0.0
-0.3
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-0.2
+0.1
+0.1
-0.3
-0.2
carbon source
D-Glucose (C)
-0.1
-0.2
+0.1
-0.4
+0.3
carbon source
L-Alanine (C)
+0.1
-0.0
+0.2
+0.2
-0.6
carbon source
D-Fructose (C)
+0.3
+0.2
-0.5
+0.1
-0.1
carbon source
D-Galactose (C)
+0.2
+0.1
+0.3
-0.1
-0.6
carbon source
L-Histidine (C)
+0.5
+0.3
-0.2
-0.1
-0.5
carbon source
butyrate (C)
+0.1
-0.0
-0.0
+0.4
-0.4
carbon source
a-Ketoglutaric (C)
+0.0
+0.1
+0.2
+0.4
-0.6
carbon source
Glucuronamide (C)
-0.0
+0.2
+0.4
-0.3
-0.0
carbon source
D-Sorbitol (C)
+0.2
+0.1
-0.4
+0.0
+0.2
carbon source
Formate (C)
+0.3
+0.1
-0.3
+0.2
-0.0
carbon source
D-Xylose (C)
+0.1
+0.1
-0.4
+0.1
+0.6
carbon source
propionate (C)
-0.0
-0.2
-0.0
+0.0
+0.7
carbon source
Formate (C)
+0.2
-0.0
+0.2
+0.4
-0.3
carbon source
butyrate (C)
+0.2
-0.0
+0.3
-0.2
+0.3
carbon source
D,L-Malic Acid (C)
+0.0
-0.2
+0.4
+0.3
+0.0
carbon source
4-Hydroxybenzoic Acid (C)
+0.0
+0.2
-0.2
-0.0
+0.5
carbon source
Glycolic Acid (C)
+0.2
+0.3
-0.1
+0.1
+0.3
carbon source
Ethanol (C)
+0.2
+0.1
+0.4
+0.2
-0.1
carbon source
casaminos (C)
+0.0
+0.3
+0.0
+0.1
+0.5
carbon source
L-Leucine (C)
+0.1
-0.0
+0.3
+0.3
+0.3
carbon source
D-Serine (C)
+0.4
+0.1
+0.5
+0.1
+0.6
carbon source
L-tyrosine (C)
+0.4
+0.3
+0.2
+0.2
+0.8
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ABID97_RS00190
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