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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS00100 and ABID97_RS00105 are separated by 18 nucleotides
ABID97_RS00105 and ABID97_RS00110 are separated by 119 nucleotides
ABID97_RS00110 and ABID97_RS00115 are separated by 65 nucleotides
ABID97_RS00115 and ABID97_RS00120 are separated by 11 nucleotides
ABID97_RS00100: ABID97_RS00100 - formyltetrahydrofolate deformylase, at 21,668 to 22,525
_RS00100
ABID97_RS00105: ABID97_RS00105 - YXWGXW repeat-containing protein, at 22,544 to 22,921
_RS00105
ABID97_RS00110: ABID97_RS00110 - SGNH/GDSL hydrolase family protein, at 23,041 to 24,363
_RS00110
ABID97_RS00115: ABID97_RS00115 - carboxyl transferase domain-containing protein, at 24,429 to 27,734
_RS00115
ABID97_RS00120: ABID97_RS00120 - AMP-binding protein, at 27,746 to 29,359
_RS00120
Group
Condition
ABID97
_RS00100
ABID97
_RS00105
ABID97
_RS00110
ABID97
_RS00115
ABID97
_RS00120
carbon source
L-Phenylalanine (C)
N.D.
+0.2
-1.8
+0.1
+0.1
carbon source
D-Fructose (C)
N.D.
+0.0
-1.0
+0.0
+0.0
carbon source
Fumarate (C)
N.D.
-0.1
-0.7
+0.1
-0.1
carbon source
D-Gluconic Acid (C)
N.D.
+0.2
-1.1
+0.2
+0.2
carbon source
L-Glutamine (C)
N.D.
+0.2
-0.8
-0.0
+0.2
carbon source
Glycerol (C)
N.D.
+0.1
-0.6
+0.1
-0.0
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
+0.1
-0.9
+0.2
+0.3
carbon source
Ethanol (C)
N.D.
+0.2
-0.6
+0.1
+0.0
carbon source
Tween 20 (C)
N.D.
+0.2
-0.6
+0.1
+0.1
carbon source
Adenine (C)
N.D.
+0.3
-0.5
+0.2
+0.1
carbon source
L-tyrosine (C)
N.D.
+0.2
-0.5
+0.2
+0.1
carbon source
L-Tryptophan (C)
N.D.
+0.3
-0.5
+0.3
+0.1
carbon source
D-Sorbitol (C)
N.D.
+0.3
-0.4
+0.2
+0.1
carbon source
D-Arabinose (C)
N.D.
+0.2
-0.3
+0.3
+0.2
carbon source
D-Serine (C)
N.D.
+0.3
-0.4
+0.3
+0.2
carbon source
D,L-Malic Acid (C)
N.D.
+0.4
-0.4
+0.4
+0.1
carbon source
a-Ketoglutaric (C)
N.D.
+0.3
+0.4
+0.1
+0.1
carbon source
D-Glucose (C)
N.D.
+0.3
+0.5
+0.1
+0.0
carbon source
Formate (C)
N.D.
+0.3
+0.2
+0.2
+0.2
carbon source
D-Mannose (C)
N.D.
+0.3
+0.2
+0.3
+0.1
carbon source
acetate (C)
N.D.
+0.1
+0.5
+0.2
+0.2
carbon source
L-Threonine (C)
N.D.
+0.3
+0.5
+0.2
-0.0
carbon source
D-Ribose (C)
N.D.
+0.3
+0.4
+0.3
+0.0
carbon source
D,L-Malic Acid (C)
N.D.
+0.3
+0.4
+0.2
+0.1
carbon source
Formate (C)
N.D.
+0.4
+0.4
+0.3
+0.0
carbon source
L-Asparagine (C)
N.D.
+0.3
+0.5
+0.2
+0.0
carbon source
Adenine (C)
N.D.
+0.1
+0.8
+0.1
+0.2
carbon source
L-Arabinose (C)
N.D.
+0.4
+0.6
+0.2
-0.0
carbon source
Glucuronamide (C)
N.D.
+0.3
+0.8
+0.2
+0.3
carbon source
L-Asparagine (C)
N.D.
+0.4
+0.9
+0.1
+0.2
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