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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS00075 and ABID97_RS00080 are separated by 88 nucleotides
ABID97_RS00080 and ABID97_RS00085 are separated by 67 nucleotides
ABID97_RS00085 and ABID97_RS00090 are separated by 60 nucleotides
ABID97_RS00090 and ABID97_RS00095 are separated by 16 nucleotides
ABID97_RS00075: ABID97_RS00075 - DUF3108 domain-containing protein, at 16,608 to 17,813
_RS00075
ABID97_RS00080: ABID97_RS00080 - DUF3567 domain-containing protein, at 17,902 to 18,213
_RS00080
ABID97_RS00085: ABID97_RS00085 - AbrB family transcriptional regulator, at 18,281 to 19,342
_RS00085
ABID97_RS00090: ABID97_RS00090 - ChaN family lipoprotein, at 19,403 to 20,248
_RS00090
ABID97_RS00095: ABID97_RS00095 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 20,265 to 21,599
_RS00095
Group
Condition
ABID97
_RS00075
ABID97
_RS00080
ABID97
_RS00085
ABID97
_RS00090
ABID97
_RS00095
carbon source
Gly-Glu (C)
-0.8
-1.2
-0.7
-0.5
+0.3
carbon source
L-Phenylalanine (C)
-0.1
-1.4
-0.4
+0.0
-0.5
carbon source
L-Proline (C)
-0.2
-0.5
-0.8
-0.3
-0.5
carbon source
D-Glucose (C)
-0.9
-0.9
-0.7
-0.1
+0.8
carbon source
acetate (C)
-0.1
-0.6
-1.3
-0.2
+0.5
carbon source
L-tyrosine (C)
+0.3
+0.3
-2.0
+0.6
+0.3
carbon source
D-Arabinose (C)
-1.3
-0.5
-0.6
-0.5
+2.4
carbon source
L-tyrosine (C)
+1.0
-0.3
-0.8
-0.3
+1.0
carbon source
D-Glucose (C)
+0.1
-0.2
-0.6
+0.4
+1.1
carbon source
L-Leucine (C)
+0.4
-0.5
+0.1
-0.2
+1.1
carbon source
Formate (C)
+1.0
+0.4
-1.0
+0.2
+0.4
carbon source
L-Histidine (C)
+0.5
-0.3
-0.6
+0.6
+1.2
carbon source
D-Mannose (C)
+0.4
-0.0
-0.5
+0.5
+1.0
carbon source
L-Alanine (C)
+0.4
-0.4
+0.8
-0.0
+0.5
carbon source
2-Deoxy-D-Ribose (C)
+0.5
-0.5
+0.8
+0.2
+0.9
carbon source
D,L-Malic Acid (C)
+0.9
-0.1
+0.7
+0.3
+0.3
carbon source
Tween 20 (C)
+0.3
-0.1
+0.5
+0.6
+0.8
carbon source
L-Malic (C)
+0.8
+0.4
-0.3
+0.3
+0.8
carbon source
L-Histidine (C)
+0.4
-0.1
+0.3
+0.5
+1.1
carbon source
L-Fucose (C)
+0.3
+0.1
+0.7
+0.5
+0.6
carbon source
L-Tryptophan (C)
+1.1
+0.1
+0.2
+0.5
+0.4
carbon source
Ethanol (C)
+0.8
+0.4
+0.1
-0.3
+1.4
carbon source
D-Serine (C)
+0.5
+0.1
+0.9
+0.3
+0.6
carbon source
D-Ribose (C)
+0.5
+0.2
+0.6
+0.5
+0.8
carbon source
L-Arabinose (C)
+0.7
+0.4
+0.8
+0.2
+0.7
carbon source
Ethanol (C)
+0.9
+0.3
+0.0
+0.1
+1.6
carbon source
D-Glucuronic Acid (C)
+0.7
-0.5
+0.3
+0.6
+1.8
carbon source
D-Gluconic Acid (C)
+0.4
+0.1
+0.5
+0.2
+1.8
carbon source
D-Gluconic Acid (C)
+0.2
+0.2
+0.4
+0.1
+2.1
carbon source
D-Arabinose (C)
+0.1
+0.2
+0.5
+0.2
+2.6
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