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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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500 nt
ABI39_RS21250 and ABI39_RS21255 overlap by 4 nucleotides
ABI39_RS21255 and ABI39_RS21260 are separated by 58 nucleotides
ABI39_RS21260 and ABI39_RS21265 are separated by 4 nucleotides
ABI39_RS21265 and ABI39_RS21270 are separated by 171 nucleotides
ABI39_RS21250: ABI39_RS21250 - hypothetical protein, at 5,233,428 to 5,234,357
_RS21250
ABI39_RS21255: ABI39_RS21255 - ABC transporter ATP-binding protein, at 5,234,354 to 5,235,031
_RS21255
ABI39_RS21260: ABI39_RS21260 - carboxypeptidase-like regulatory domain-containing protein, at 5,235,090 to 5,237,750
_RS21260
ABI39_RS21265: ABI39_RS21265 - GLPGLI family protein, at 5,237,755 to 5,238,621
_RS21265
ABI39_RS21270: ABI39_RS21270 - HAMP domain-containing histidine kinase, at 5,238,793 to 5,240,226
_RS21270
Group
Condition
ABI39
_RS21250
ABI39
_RS21255
ABI39
_RS21260
ABI39
_RS21265
ABI39
_RS21270
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
+0.2
-0.3
+0.0
-1.9
-0.0
carbon source
Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
+0.1
-0.6
-0.0
-1.1
-0.0
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.1
-0.2
+0.4
-1.4
-0.1
carbon source
b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
-0.2
-0.2
+0.3
-0.7
+0.1
carbon source
D-Galactose (C)
-0.3
+0.3
+0.0
-0.5
-0.1
carbon source
Amylopectin from Potato (C)
-0.4
+0.4
+0.1
-0.3
-0.3
carbon source
amylopectin from maize (C)
-0.6
-0.1
-0.3
+0.5
+0.0
carbon source
Pectin from apple; filtered 1 mg/ml (C)
+0.2
+0.0
+0.1
-0.6
+0.0
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.1
+0.2
+0.0
-0.7
+0.3
carbon source
D-Glucose 5 mg/ml (C)
+0.3
-0.1
+0.1
-0.6
+0.1
carbon source
b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
+0.1
-0.4
+0.0
+0.4
-0.2
carbon source
Mucin from porcine stomach type III (C)
-0.3
-0.1
-0.0
+0.5
-0.1
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
-0.5
-0.0
-0.0
+0.9
-0.4
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.2
+0.2
+0.0
-0.6
+0.2
carbon source
polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
-0.2
-0.3
+0.2
+0.5
-0.1
carbon source
Fructose-6-phosphate (C)
-0.2
-0.2
-0.1
+0.6
+0.1
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
+0.4
-0.1
+0.2
-0.6
+0.3
carbon source
Amylopectin from Potato (C)
-0.6
+0.1
+0.0
+0.7
+0.0
carbon source
Pectin from apple; autoclaved 2.5 mg/ml (C)
-0.2
+0.1
+0.0
+0.7
-0.4
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
+0.2
+0.2
+0.3
-0.3
-0.1
carbon source
Galactan from Potato; autoclaved 2.5 mg/ml (C)
+0.4
+0.3
+0.4
-0.5
-0.1
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.2
+0.2
-0.0
+0.7
-0.0
carbon source
Red Arabinan from sugar-beet; filtered 5 mg/ml (C)
+0.3
+0.2
+0.1
-0.3
+0.1
carbon source
Xylan from Beechwood (C)
-0.2
+0.3
-0.0
+0.6
-0.0
carbon source
beta-Cyclodextrin 2.5 mg/ml (C)
+0.2
-0.2
+0.2
+0.6
-0.0
carbon source
(+)-Arabinogalactan; autoclaved 5 mg/ml (C)
+0.1
+0.4
-0.1
+0.3
+0.2
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-0.3
+0.3
-0.2
+1.0
+0.1
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
+0.3
+0.3
+0.2
+0.4
-0.1
carbon source
amylopectin from maize (C)
+0.1
+0.5
+0.0
+0.2
+0.3
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.1
+0.5
+0.2
+0.3
+0.4
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