Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS21250 and ABI39_RS21255 overlap by 4 nucleotidesABI39_RS21255 and ABI39_RS21260 are separated by 58 nucleotidesABI39_RS21260 and ABI39_RS21265 are separated by 4 nucleotidesABI39_RS21265 and ABI39_RS21270 are separated by 171 nucleotides ABI39_RS21250: ABI39_RS21250 - hypothetical protein, at 5,233,428 to 5,234,357 _RS21250 ABI39_RS21255: ABI39_RS21255 - ABC transporter ATP-binding protein, at 5,234,354 to 5,235,031 _RS21255 ABI39_RS21260: ABI39_RS21260 - carboxypeptidase-like regulatory domain-containing protein, at 5,235,090 to 5,237,750 _RS21260 ABI39_RS21265: ABI39_RS21265 - GLPGLI family protein, at 5,237,755 to 5,238,621 _RS21265 ABI39_RS21270: ABI39_RS21270 - HAMP domain-containing histidine kinase, at 5,238,793 to 5,240,226 _RS21270
Group Condition ABI39_RS21250 ABI39_RS21255 ABI39_RS21260 ABI39_RS21265 ABI39_RS21270
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.2 -0.3 +0.0 -1.9 -0.0
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) +0.1 -0.6 -0.0 -1.1 -0.0
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.1 -0.2 +0.4 -1.4 -0.1
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) -0.2 -0.2 +0.3 -0.7 +0.1
carbon source D-Galactose (C) -0.3 +0.3 +0.0 -0.5 -0.1
carbon source Amylopectin from Potato (C) -0.4 +0.4 +0.1 -0.3 -0.3
carbon source amylopectin from maize (C) -0.6 -0.1 -0.3 +0.5 +0.0
carbon source Pectin from apple; filtered 1 mg/ml (C) +0.2 +0.0 +0.1 -0.6 +0.0
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.1 +0.2 +0.0 -0.7 +0.3
carbon source D-Glucose 5 mg/ml (C) +0.3 -0.1 +0.1 -0.6 +0.1
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) +0.1 -0.4 +0.0 +0.4 -0.2
carbon source Mucin from porcine stomach type III (C) -0.3 -0.1 -0.0 +0.5 -0.1
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.5 -0.0 -0.0 +0.9 -0.4
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.2 +0.2 +0.0 -0.6 +0.2
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) -0.2 -0.3 +0.2 +0.5 -0.1
carbon source Fructose-6-phosphate (C) -0.2 -0.2 -0.1 +0.6 +0.1
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.4 -0.1 +0.2 -0.6 +0.3
carbon source Amylopectin from Potato (C) -0.6 +0.1 +0.0 +0.7 +0.0
carbon source Pectin from apple; autoclaved 2.5 mg/ml (C) -0.2 +0.1 +0.0 +0.7 -0.4
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.2 +0.2 +0.3 -0.3 -0.1
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.4 +0.3 +0.4 -0.5 -0.1
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.2 +0.2 -0.0 +0.7 -0.0
carbon source Red Arabinan from sugar-beet; filtered 5 mg/ml (C) +0.3 +0.2 +0.1 -0.3 +0.1
carbon source Xylan from Beechwood (C) -0.2 +0.3 -0.0 +0.6 -0.0
carbon source beta-Cyclodextrin 2.5 mg/ml (C) +0.2 -0.2 +0.2 +0.6 -0.0
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) +0.1 +0.4 -0.1 +0.3 +0.2
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.3 +0.3 -0.2 +1.0 +0.1
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.3 +0.3 +0.2 +0.4 -0.1
carbon source amylopectin from maize (C) +0.1 +0.5 +0.0 +0.2 +0.3
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 +0.5 +0.2 +0.3 +0.4
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