Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS20615 and ABI39_RS20620 are separated by 126 nucleotidesABI39_RS20620 and ABI39_RS20625 are separated by 124 nucleotidesABI39_RS20625 and ABI39_RS20630 are separated by 16 nucleotidesABI39_RS20630 and ABI39_RS20635 are separated by 129 nucleotides ABI39_RS20615: ABI39_RS20615 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 5,082,253 to 5,083,077 _RS20615 ABI39_RS20620: ABI39_RS20620 - ACP S-malonyltransferase, at 5,083,204 to 5,084,091 _RS20620 ABI39_RS20625: ABI39_RS20625 - patatin-like phospholipase family protein, at 5,084,216 to 5,085,001 _RS20625 ABI39_RS20630: ABI39_RS20630 - alpha-amylase family protein, at 5,085,018 to 5,086,715 _RS20630 ABI39_RS20635: ABI39_RS20635 - HpaII family restriction endonuclease, at 5,086,845 to 5,087,933 _RS20635
Group Condition ABI39_RS20615 ABI39_RS20620 ABI39_RS20625 ABI39_RS20630 ABI39_RS20635
carbon source Amylopectin from Potato (C) -3.3 N.D. -0.4 +0.0 -0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -3.8 N.D. +0.1 +0.0 -0.2
carbon source Amylopectin from Potato (C) -3.1 N.D. -0.2 +0.1 -0.2
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -3.6 N.D. +0.5 +0.2 -0.1
carbon source D-Galactose (C) -2.2 N.D. -0.4 -0.0 -0.1
carbon source D-Mannose (C) -2.7 N.D. -0.1 +0.1 -0.0
carbon source D-Xylose (C) -2.4 N.D. -0.1 -0.1 -0.0
carbon source D-Glucose (C) -2.3 N.D. -0.1 -0.2 -0.0
carbon source D-Mannose (C) -2.5 N.D. -0.2 +0.1 +0.1
carbon source D-Galactose (C) -2.2 N.D. -0.2 -0.0 +0.1
carbon source a-Cyclodextrin (C) -2.2 N.D. -0.0 -0.1 -0.0
carbon source Red Arabinan from sugar-beet; filtered 5 mg/ml (C) -1.9 N.D. -0.3 -0.1 -0.1
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) -2.2 N.D. +0.0 -0.1 -0.1
carbon source D-Raffinose (C) -2.0 N.D. -0.3 +0.0 -0.0
carbon source beta-Cyclodextrin (C) -2.3 N.D. +0.0 -0.0 +0.0
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -2.0 N.D. +0.1 -0.4 +0.0
carbon source D-Glucose (C) -2.4 N.D. +0.2 -0.1 +0.0
carbon source Red Arabinan from sugar-beet (C) -2.3 N.D. -0.1 +0.2 +0.1
carbon source a-Cyclodextrin 2.5 mg/ml (C) -1.8 N.D. -0.3 -0.2 +0.2
carbon source D-Raffinose (C) -2.0 N.D. +0.2 +0.1 -0.1
carbon source NAG (C) -2.0 N.D. +0.1 +0.2 -0.0
carbon source D-Maltose (C) -2.1 N.D. +0.2 +0.1 +0.1
carbon source NAG (C) -2.0 N.D. +0.2 +0.1 -0.0
carbon source beta-Cyclodextrin 2.5 mg/ml (C) -1.7 N.D. +0.3 -0.3 +0.0
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -2.4 N.D. +0.6 +0.0 +0.2
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -3.0 N.D. +1.1 -0.1 +0.3
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -2.0 N.D. +0.6 -0.1 +0.0
carbon source D-Glucose 5 mg/ml (C) -1.8 N.D. +0.3 -0.2 +0.2
carbon source polygalacturonic (ultrapure) (C) -1.8 N.D. +0.3 +0.2 -0.0
carbon source polygalacturonic (ultrapure) (C) -1.8 N.D. +0.5 -0.0 +0.1
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