Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS20430 and ABI39_RS20435 are separated by 174 nucleotidesABI39_RS20435 and ABI39_RS20440 are separated by 7 nucleotidesABI39_RS20440 and ABI39_RS20445 are separated by 240 nucleotidesABI39_RS20445 and ABI39_RS20450 are separated by 91 nucleotides ABI39_RS20430: ABI39_RS20430 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 5,039,759 to 5,040,328 _RS20430 ABI39_RS20435: ABI39_RS20435 - chain-length determining protein, at 5,040,503 to 5,041,642 _RS20435 ABI39_RS20440: ABI39_RS20440 - SLBB domain-containing protein, at 5,041,650 to 5,044,142 _RS20440 ABI39_RS20445: ABI39_RS20445 - xylose isomerase, at 5,044,383 to 5,045,699 _RS20445 ABI39_RS20450: ABI39_RS20450 - carbohydrate kinase, at 5,045,791 to 5,047,284 _RS20450
Group Condition ABI39_RS20430 ABI39_RS20435 ABI39_RS20440 ABI39_RS20445 ABI39_RS20450
carbon source D-Xylose (C) -0.4 +0.1 -0.1 -7.2 -7.4
carbon source Xylan from Beechwood (C) -1.6 -0.5 -0.4 -6.6 -5.6
carbon source D-Xylose (C) -0.4 -0.1 -0.1 -7.5 -6.5
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -1.5 +0.4 -0.0 -6.4 -6.8
carbon source Xylan from Beechwood (C) -1.4 -0.2 -0.2 -7.5 -5.0
carbon source D-Xylose 2.5 mg/ml (C) -0.3 +0.2 +0.1 -7.7 -6.2
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -1.4 -0.2 -0.2 -6.5 -5.2
carbon source D-Xylose 2.5 mg/ml (C) -0.3 +0.0 -0.1 -4.3 -5.3
carbon source Amylopectin from Potato (C) -1.4 -2.4 -2.1 +0.4 +0.1
carbon source Xylan from corn core; autoclaved 2.5 mg/ml (C) -0.1 +0.0 -0.5 -2.3 -2.5
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -1.5 -1.6 -1.8 +0.1 -0.2
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -1.2 -1.5 -1.5 -0.4 -0.3
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -1.8 -2.0 -1.4 +0.2 +0.3
carbon source Xylan from corn core; autoclaved 2.5 mg/ml (C) -0.1 -0.2 -0.3 -2.2 -1.9
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -1.0 -1.4 -1.7 -0.0 -0.1
carbon source (+)-Arabinogalactan (C) -1.2 -1.1 -1.1 -0.0 -0.0
carbon source Amylopectin from Potato (C) -0.7 -1.4 -1.2 -0.2 +0.1
carbon source Glycogen; autoclaved 2.5 mg/ml (C) -0.4 -1.5 -1.3 +0.1 +0.0
carbon source a-Cyclodextrin 2.5 mg/ml (C) -1.5 -0.7 -0.8 +0.1 +0.1
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) +0.0 -1.9 -1.2 +0.4 -0.0
carbon source Glycogen; filtered 2.5 mg/ml (C) -0.3 -1.1 -1.1 +0.3 +0.3
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.9 +1.5 +0.8 -0.1 -0.5
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.9 +1.4 +1.0 -0.3 -0.3
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -0.9 +0.9 +0.6 +0.6 -0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.0 +1.5 +1.3 -0.1 -0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.4 +1.9 +1.8 -0.3 -0.4
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) -0.9 +2.0 +1.4 +0.7 -0.1
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) -0.6 +2.6 +1.7 -0.1 -0.1
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.4 +2.4 +2.0 +0.1 +0.4
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.0 +3.0 +2.7 -0.3 +0.2
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