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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS20145 and ABI39_RS20150 are separated by 351 nucleotides
ABI39_RS20150 and ABI39_RS20155 are separated by 49 nucleotides
ABI39_RS20155 and ABI39_RS20160 are separated by 166 nucleotides
ABI39_RS20160 and ABI39_RS20165 are separated by 217 nucleotides
ABI39_RS20145: ABI39_RS20145 - transglutaminase domain-containing protein, at 4,976,002 to 4,978,665
_RS20145
ABI39_RS20150: ABI39_RS20150 - Fic family protein, at 4,979,017 to 4,979,757
_RS20150
ABI39_RS20155: ABI39_RS20155 - two pore domain potassium channel family protein, at 4,979,807 to 4,980,526
_RS20155
ABI39_RS20160: ABI39_RS20160 - amino acid permease, at 4,980,693 to 4,982,270
_RS20160
ABI39_RS20165: ABI39_RS20165 - PAS domain-containing sensor histidine kinase, at 4,982,488 to 4,984,761
_RS20165
Group
Condition
ABI39
_RS20145
ABI39
_RS20150
ABI39
_RS20155
ABI39
_RS20160
ABI39
_RS20165
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.0
+0.4
-0.1
-0.5
+0.4
carbon source
amylopectin from maize (C)
-0.1
+0.5
-0.2
-0.3
+0.4
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.1
+0.5
-0.4
-0.2
+0.2
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
+0.4
-0.2
-0.4
-0.1
+0.7
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.2
+0.7
+0.1
-0.6
+0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.2
+0.8
-0.2
+0.2
-0.1
carbon source
Fructose-6-phosphate (C)
-0.0
+0.9
+0.2
-0.3
+0.1
carbon source
amylopectin from maize (C)
+0.1
+1.1
-0.1
-0.2
+0.0
carbon source
Amylopectin from Potato (C)
+0.1
+0.5
-0.2
+0.3
+0.3
carbon source
Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C)
+0.3
+0.9
-0.0
-0.0
-0.2
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.1
+0.8
-0.1
-0.2
+0.7
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
+0.2
+0.8
-0.2
-0.1
+0.3
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.0
+1.3
-0.0
-0.4
+0.3
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.2
+1.1
+0.4
-0.2
+0.2
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
+0.2
+0.9
+0.1
-0.2
+0.2
carbon source
Galactan from Potato (C)
+0.2
+0.4
+0.4
+0.3
+0.0
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
+0.2
+1.0
-0.0
-0.0
+0.2
carbon source
Red Arabinan from sugar-beet; filtered 5 mg/ml (C)
+0.2
+0.7
+0.2
+0.2
+0.2
carbon source
Beta-Lactose 2.5 mg/ml (C)
+0.1
+0.7
+0.1
+0.3
+0.3
carbon source
Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
+0.2
+0.6
+0.1
+0.3
+0.3
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
+0.2
+0.9
-0.2
+0.2
+0.3
carbon source
B-glucan from yeast (C)
+0.2
+0.8
+0.4
-0.1
+0.3
carbon source
B-glucan from yeast; autoclaved 2.5 mg/ml (C)
+0.3
+0.7
+0.1
+0.0
+0.4
carbon source
Beta-Lactose 2.5 mg/ml (C)
+0.1
+0.5
-0.1
+0.6
+0.5
carbon source
D-Glucose 5 mg/ml (C)
+0.2
+0.9
+0.1
+0.1
+0.4
carbon source
Galactan from Potato; autoclaved 2.5 mg/ml (C)
+0.2
+1.1
+0.2
+0.1
+0.2
carbon source
Galactan from Potato (C)
+0.2
+0.5
+0.5
+0.7
-0.0
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
+0.2
+1.1
+0.2
-0.0
+0.5
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
+0.3
+1.5
-0.0
+0.0
+0.1
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
+0.1
+1.6
+0.3
+0.1
+0.1
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