Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS20145 and ABI39_RS20150 are separated by 351 nucleotidesABI39_RS20150 and ABI39_RS20155 are separated by 49 nucleotidesABI39_RS20155 and ABI39_RS20160 are separated by 166 nucleotidesABI39_RS20160 and ABI39_RS20165 are separated by 217 nucleotides ABI39_RS20145: ABI39_RS20145 - transglutaminase domain-containing protein, at 4,976,002 to 4,978,665 _RS20145 ABI39_RS20150: ABI39_RS20150 - Fic family protein, at 4,979,017 to 4,979,757 _RS20150 ABI39_RS20155: ABI39_RS20155 - two pore domain potassium channel family protein, at 4,979,807 to 4,980,526 _RS20155 ABI39_RS20160: ABI39_RS20160 - amino acid permease, at 4,980,693 to 4,982,270 _RS20160 ABI39_RS20165: ABI39_RS20165 - PAS domain-containing sensor histidine kinase, at 4,982,488 to 4,984,761 _RS20165
Group Condition ABI39_RS20145 ABI39_RS20150 ABI39_RS20155 ABI39_RS20160 ABI39_RS20165
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.0 +0.4 -0.1 -0.5 +0.4
carbon source amylopectin from maize (C) -0.1 +0.5 -0.2 -0.3 +0.4
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 +0.5 -0.4 -0.2 +0.2
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.4 -0.2 -0.4 -0.1 +0.7
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.2 +0.7 +0.1 -0.6 +0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.2 +0.8 -0.2 +0.2 -0.1
carbon source Fructose-6-phosphate (C) -0.0 +0.9 +0.2 -0.3 +0.1
carbon source amylopectin from maize (C) +0.1 +1.1 -0.1 -0.2 +0.0
carbon source Amylopectin from Potato (C) +0.1 +0.5 -0.2 +0.3 +0.3
carbon source Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) +0.3 +0.9 -0.0 -0.0 -0.2
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.1 +0.8 -0.1 -0.2 +0.7
carbon source a-Cyclodextrin 2.5 mg/ml (C) +0.2 +0.8 -0.2 -0.1 +0.3
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.0 +1.3 -0.0 -0.4 +0.3
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.2 +1.1 +0.4 -0.2 +0.2
carbon source a-Cyclodextrin 2.5 mg/ml (C) +0.2 +0.9 +0.1 -0.2 +0.2
carbon source Galactan from Potato (C) +0.2 +0.4 +0.4 +0.3 +0.0
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.2 +1.0 -0.0 -0.0 +0.2
carbon source Red Arabinan from sugar-beet; filtered 5 mg/ml (C) +0.2 +0.7 +0.2 +0.2 +0.2
carbon source Beta-Lactose 2.5 mg/ml (C) +0.1 +0.7 +0.1 +0.3 +0.3
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) +0.2 +0.6 +0.1 +0.3 +0.3
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.2 +0.9 -0.2 +0.2 +0.3
carbon source B-glucan from yeast (C) +0.2 +0.8 +0.4 -0.1 +0.3
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) +0.3 +0.7 +0.1 +0.0 +0.4
carbon source Beta-Lactose 2.5 mg/ml (C) +0.1 +0.5 -0.1 +0.6 +0.5
carbon source D-Glucose 5 mg/ml (C) +0.2 +0.9 +0.1 +0.1 +0.4
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.2 +1.1 +0.2 +0.1 +0.2
carbon source Galactan from Potato (C) +0.2 +0.5 +0.5 +0.7 -0.0
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.2 +1.1 +0.2 -0.0 +0.5
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.3 +1.5 -0.0 +0.0 +0.1
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.1 +1.6 +0.3 +0.1 +0.1
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