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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS18975 and ABI39_RS18985 are separated by 251 nucleotides
ABI39_RS18985 and ABI39_RS18990 are separated by 266 nucleotides
ABI39_RS18990 and ABI39_RS18995 are separated by 310 nucleotides
ABI39_RS18995 and ABI39_RS19000 are separated by 90 nucleotides
ABI39_RS18975: ABI39_RS18975 - hypothetical protein, at 4,776,920 to 4,778,161
_RS18975
ABI39_RS18985: ABI39_RS18985 - toprim domain-containing protein, at 4,778,413 to 4,779,384
_RS18985
ABI39_RS18990: ABI39_RS18990 - plasmid recombination protein, at 4,779,651 to 4,780,958
_RS18990
ABI39_RS18995: ABI39_RS18995 - hypothetical protein, at 4,781,269 to 4,781,847
_RS18995
ABI39_RS19000: ABI39_RS19000 - hypothetical protein, at 4,781,938 to 4,782,597
_RS19000
Group
Condition
ABI39
_RS18975
ABI39
_RS18985
ABI39
_RS18990
ABI39
_RS18995
ABI39
_RS19000
carbon source
Galactan from Potato; autoclaved 2.5 mg/ml (C)
-0.1
-0.3
-1.4
-0.3
-0.2
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
-0.3
-0.4
-1.4
-0.0
-0.0
carbon source
D-Mannose 2.5 mg/ml (C)
-0.2
-0.0
-1.2
-0.2
-0.1
carbon source
Galactan from Potato (C)
-0.5
-0.4
-0.2
-0.4
-0.1
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
-0.7
-0.1
-0.6
-0.1
+0.0
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
-0.4
-0.1
-0.0
-0.7
-0.2
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.2
-0.2
-0.8
-0.3
+0.2
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-0.9
-0.1
-0.4
+0.0
+0.1
carbon source
Glycogen; autoclaved 2.5 mg/ml (C)
-0.3
+0.1
-0.4
-0.4
-0.2
carbon source
Pectin from apple; filtered 1 mg/ml (C)
-0.2
-0.2
-0.7
-0.2
+0.1
carbon source
B-glucan from yeast; autoclaved 2.5 mg/ml (C)
+0.0
+0.2
-0.5
-0.5
-0.4
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.2
-0.2
-0.7
-0.5
+0.2
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
+0.2
-0.1
-0.8
-0.0
-0.1
carbon source
Locust bean gum; autoclaved 2.5 mg/ml (C)
-0.1
-0.2
-0.8
+0.1
+0.2
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
-0.3
+0.3
-0.7
-0.2
+0.3
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.0
-0.1
-0.6
-0.4
+0.4
carbon source
Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
+0.1
+0.0
-1.1
+0.2
+0.2
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-0.7
+0.5
-0.8
+0.2
+0.3
carbon source
Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
-0.6
+0.4
-0.5
+0.1
+0.2
carbon source
D-Arabinose (C)
+0.3
-0.3
-0.5
+0.2
-0.0
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
+0.3
+0.3
-0.7
-0.2
-0.0
carbon source
Pectin from apple; autoclaved 2.5 mg/ml (C)
+0.4
-0.1
-0.7
+0.1
+0.1
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.5
+0.2
-0.2
-0.2
-0.4
carbon source
N-acetylneuraminic (C)
+0.5
-0.1
+0.2
-0.4
-0.2
carbon source
Pectin from apple; autoclaved 2.5 mg/ml (C)
+0.4
+0.1
-0.7
+0.2
+0.0
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
+0.9
-0.4
-0.3
+0.2
-0.3
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
+0.6
-0.2
-0.4
+0.1
+0.1
carbon source
polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
+0.6
+0.1
-0.4
+0.5
-0.2
carbon source
Amylopectin from Potato (C)
+0.3
-0.0
+0.7
-0.4
-0.0
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
+1.4
+0.1
+0.6
+0.1
+0.1
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