Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS18880 and ABI39_RS18885 are separated by 274 nucleotidesABI39_RS18885 and ABI39_RS18895 are separated by 716 nucleotidesABI39_RS18895 and ABI39_RS18900 are separated by 66 nucleotidesABI39_RS18900 and ABI39_RS18905 overlap by 8 nucleotides ABI39_RS18880: ABI39_RS18880 - hypothetical protein, at 4,757,926 to 4,758,507 _RS18880 ABI39_RS18885: ABI39_RS18885 - ATP-dependent chaperone ClpB, at 4,758,782 to 4,761,370 _RS18885 ABI39_RS18895: ABI39_RS18895 - DUF5606 domain-containing protein, at 4,762,087 to 4,762,527 _RS18895 ABI39_RS18900: ABI39_RS18900 - dephospho-CoA kinase, at 4,762,594 to 4,763,190 _RS18900 ABI39_RS18905: ABI39_RS18905 - YbbR-like domain-containing protein, at 4,763,183 to 4,764,196 _RS18905
Group Condition ABI39_RS18880 ABI39_RS18885 ABI39_RS18895 ABI39_RS18900 ABI39_RS18905
carbon source N-acetylneuraminic (C) -0.0 -0.0 -0.9 N.D. -0.5
carbon source amylopectin from maize (C) -0.5 -0.2 +0.1 N.D. -0.8
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.2 -0.0 -1.9 N.D. +0.5
carbon source Amylopectin from Potato (C) -0.9 -0.3 -0.1 N.D. +0.1
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.5 -0.1 +0.2 N.D. -0.6
carbon source N-acetylneuraminic (C) +0.3 -0.0 -0.5 N.D. -0.5
carbon source Glucose-6-Phosphate (C) +0.2 +0.1 -1.0 N.D. -0.0
carbon source Fructose-6-phosphate (C) +0.2 +0.1 -0.9 N.D. -0.1
carbon source Mannose-6-Phosphate (C) -0.3 +0.1 -0.7 N.D. +0.3
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.6 -0.3 +0.1 N.D. +0.3
carbon source Beta-Lactose 2.5 mg/ml (C) +0.3 +0.1 -0.9 N.D. +0.2
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -1.0 -0.1 +0.7 N.D. +0.2
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.6 -0.1 +0.6 N.D. -0.1
carbon source amylopectin from maize (C) +1.1 -0.0 -0.4 N.D. -0.8
carbon source Beta-Lactose 2.5 mg/ml (C) -0.0 -0.0 -0.6 N.D. +0.7
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) -0.6 +0.1 +0.9 N.D. -0.0
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.6 -0.2 -0.3 N.D. +0.3
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.8 -0.3 +0.3 N.D. -0.4
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.5 -0.1 -0.8 N.D. +0.8
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.2 +0.1 +0.8 N.D. -0.5
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.7 -0.0 -0.3 N.D. +0.3
carbon source Amylopectin from Potato (C) +0.2 -0.3 +0.2 N.D. +0.5
carbon source Glycogen; filtered 2.5 mg/ml (C) +0.8 +0.0 +0.3 N.D. -0.2
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.8 -0.2 +0.3 N.D. +0.2
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.6 -0.1 +0.2 N.D. +0.4
carbon source polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) +0.2 +0.1 +0.7 N.D. +0.3
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) +0.4 +0.2 +0.1 N.D. +0.8
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +1.0 +0.0 -0.1 N.D. +0.5
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.8 -0.1 +0.8 N.D. +0.1
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +1.0 +0.3 -0.3 N.D. +1.1
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