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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS18880 and ABI39_RS18885 are separated by 274 nucleotides
ABI39_RS18885 and ABI39_RS18895 are separated by 716 nucleotides
ABI39_RS18895 and ABI39_RS18900 are separated by 66 nucleotides
ABI39_RS18900 and ABI39_RS18905 overlap by 8 nucleotides
ABI39_RS18880: ABI39_RS18880 - hypothetical protein, at 4,757,926 to 4,758,507
_RS18880
ABI39_RS18885: ABI39_RS18885 - ATP-dependent chaperone ClpB, at 4,758,782 to 4,761,370
_RS18885
ABI39_RS18895: ABI39_RS18895 - DUF5606 domain-containing protein, at 4,762,087 to 4,762,527
_RS18895
ABI39_RS18900: ABI39_RS18900 - dephospho-CoA kinase, at 4,762,594 to 4,763,190
_RS18900
ABI39_RS18905: ABI39_RS18905 - YbbR-like domain-containing protein, at 4,763,183 to 4,764,196
_RS18905
Group
Condition
ABI39
_RS18880
ABI39
_RS18885
ABI39
_RS18895
ABI39
_RS18900
ABI39
_RS18905
carbon source
N-acetylneuraminic (C)
-0.0
-0.0
-0.9
N.D.
-0.5
carbon source
amylopectin from maize (C)
-0.5
-0.2
+0.1
N.D.
-0.8
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
+0.2
-0.0
-1.9
N.D.
+0.5
carbon source
Amylopectin from Potato (C)
-0.9
-0.3
-0.1
N.D.
+0.1
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.5
-0.1
+0.2
N.D.
-0.6
carbon source
N-acetylneuraminic (C)
+0.3
-0.0
-0.5
N.D.
-0.5
carbon source
Glucose-6-Phosphate (C)
+0.2
+0.1
-1.0
N.D.
-0.0
carbon source
Fructose-6-phosphate (C)
+0.2
+0.1
-0.9
N.D.
-0.1
carbon source
Mannose-6-Phosphate (C)
-0.3
+0.1
-0.7
N.D.
+0.3
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-0.6
-0.3
+0.1
N.D.
+0.3
carbon source
Beta-Lactose 2.5 mg/ml (C)
+0.3
+0.1
-0.9
N.D.
+0.2
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-1.0
-0.1
+0.7
N.D.
+0.2
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
-0.6
-0.1
+0.6
N.D.
-0.1
carbon source
amylopectin from maize (C)
+1.1
-0.0
-0.4
N.D.
-0.8
carbon source
Beta-Lactose 2.5 mg/ml (C)
-0.0
-0.0
-0.6
N.D.
+0.7
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
-0.6
+0.1
+0.9
N.D.
-0.0
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.6
-0.2
-0.3
N.D.
+0.3
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.8
-0.3
+0.3
N.D.
-0.4
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
+0.5
-0.1
-0.8
N.D.
+0.8
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
+0.2
+0.1
+0.8
N.D.
-0.5
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.7
-0.0
-0.3
N.D.
+0.3
carbon source
Amylopectin from Potato (C)
+0.2
-0.3
+0.2
N.D.
+0.5
carbon source
Glycogen; filtered 2.5 mg/ml (C)
+0.8
+0.0
+0.3
N.D.
-0.2
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.8
-0.2
+0.3
N.D.
+0.2
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
+0.6
-0.1
+0.2
N.D.
+0.4
carbon source
polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)
+0.2
+0.1
+0.7
N.D.
+0.3
carbon source
polygalacturonic; autoclaved 2.5 mg/ml (C)
+0.4
+0.2
+0.1
N.D.
+0.8
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+1.0
+0.0
-0.1
N.D.
+0.5
carbon source
Galactan from Potato; autoclaved 2.5 mg/ml (C)
+0.8
-0.1
+0.8
N.D.
+0.1
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
+1.0
+0.3
-0.3
N.D.
+1.1
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