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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS18175 and ABI39_RS18180 are separated by 185 nucleotides
ABI39_RS18180 and ABI39_RS18185 are separated by 125 nucleotides
ABI39_RS18185 and ABI39_RS18190 are separated by 6 nucleotides
ABI39_RS18190 and ABI39_RS18195 are separated by 140 nucleotides
ABI39_RS18175: ABI39_RS18175 - sigma-70 family RNA polymerase sigma factor, at 4,583,637 to 4,584,107
_RS18175
ABI39_RS18180: ABI39_RS18180 - galactose mutarotase, at 4,584,293 to 4,585,426
_RS18180
ABI39_RS18185: ABI39_RS18185 - DUF3857 domain-containing protein, at 4,585,552 to 4,587,111
_RS18185
ABI39_RS18190: ABI39_RS18190 - DUF3857 and transglutaminase domain-containing protein, at 4,587,118 to 4,589,073
_RS18190
ABI39_RS18195: ABI39_RS18195 - sigma-70 family RNA polymerase sigma factor, at 4,589,214 to 4,589,759
_RS18195
Group
Condition
ABI39
_RS18175
ABI39
_RS18180
ABI39
_RS18185
ABI39
_RS18190
ABI39
_RS18195
carbon source
amylopectin from maize (C)
-0.2
-0.1
+0.2
-0.1
-1.0
carbon source
D-Fructose 2.5 mg/ml (C)
-0.1
-0.1
-0.3
-0.2
-0.3
carbon source
D-Glucose 2.5 mg/ml (C)
-0.0
+0.0
-0.2
-0.3
-0.4
carbon source
b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
-0.6
-0.3
-0.2
-0.1
+0.2
carbon source
beta-Cyclodextrin (C)
-0.3
-0.2
+0.2
-0.1
-0.3
carbon source
Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
-0.4
+0.5
-0.2
-0.1
-0.5
carbon source
beta-Cyclodextrin (C)
-0.2
-0.1
+0.2
-0.1
-0.4
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-1.1
+0.2
-0.0
+0.1
+0.2
carbon source
amylopectin from maize (C)
-0.2
-0.0
+0.2
+0.1
-0.6
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
-0.2
+0.4
-0.0
+0.0
-0.3
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.5
+0.0
+0.1
+0.1
+0.3
carbon source
Pectin from apple; filtered 1 mg/ml (C)
-0.3
+0.2
-0.1
+0.1
+0.3
carbon source
polygalacturonic; autoclaved 2.5 mg/ml (C)
+0.1
+0.5
-0.0
-0.0
-0.4
carbon source
Amylopectin from Potato (C)
-0.5
+0.3
+0.3
+0.1
-0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.2
+0.5
-0.3
-0.3
-0.0
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
-0.1
+0.6
-0.1
-0.3
+0.0
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
+0.4
+0.1
+0.1
-0.0
-0.3
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
+0.3
+0.8
-0.2
-0.3
-0.3
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.6
+0.5
-0.0
-0.4
-0.1
carbon source
Beta-Lactose 2.5 mg/ml (C)
+0.2
+0.2
+0.2
+0.2
-0.2
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.1
+0.2
+0.0
+0.0
+0.6
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
+0.6
-0.1
+0.2
-0.0
+0.2
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
+0.4
+0.4
-0.2
+0.2
+0.0
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-0.1
+0.2
+0.4
+0.3
+0.3
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
+0.7
+0.2
+0.1
+0.2
-0.2
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
+0.6
+0.4
+0.3
+0.1
-0.3
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
+0.4
+0.5
+0.1
+0.1
+0.2
carbon source
N-acetylneuraminic (C)
+0.3
+0.3
+0.3
+0.1
+0.1
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
+0.3
+0.3
+0.1
-0.0
+0.5
carbon source
polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
+0.3
+0.4
+0.1
+0.1
+0.4
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