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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS18165 and ABI39_RS18170 are separated by 18 nucleotides
ABI39_RS18170 and ABI39_RS18175 overlap by 10 nucleotides
ABI39_RS18175 and ABI39_RS18180 are separated by 185 nucleotides
ABI39_RS18180 and ABI39_RS18185 are separated by 125 nucleotides
ABI39_RS18165: ABI39_RS18165 - DUF5024 domain-containing protein, at 4,582,447 to 4,583,061
_RS18165
ABI39_RS18170: ABI39_RS18170 - hypothetical protein, at 4,583,080 to 4,583,646
_RS18170
ABI39_RS18175: ABI39_RS18175 - sigma-70 family RNA polymerase sigma factor, at 4,583,637 to 4,584,107
_RS18175
ABI39_RS18180: ABI39_RS18180 - galactose mutarotase, at 4,584,293 to 4,585,426
_RS18180
ABI39_RS18185: ABI39_RS18185 - DUF3857 domain-containing protein, at 4,585,552 to 4,587,111
_RS18185
Group
Condition
ABI39
_RS18165
ABI39
_RS18170
ABI39
_RS18175
ABI39
_RS18180
ABI39
_RS18185
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-1.5
-1.5
-1.1
+0.2
-0.0
carbon source
amylopectin from maize (C)
-3.8
+0.0
-0.2
-0.0
+0.2
carbon source
D-Mannose (C)
-1.8
-1.4
+0.2
-0.1
+0.0
carbon source
D-Glucose (C)
-2.6
-0.3
-0.1
-0.0
+0.0
carbon source
beta-Cyclodextrin (C)
-1.2
-1.5
-0.3
-0.2
+0.2
carbon source
amylopectin from maize (C)
-3.8
+0.9
-0.2
-0.1
+0.2
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-1.4
-1.0
-0.5
+0.0
+0.1
carbon source
D-Mannose (C)
-1.0
-1.6
-0.2
+0.1
+0.1
carbon source
Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
-0.8
-1.7
-0.4
+0.2
+0.0
carbon source
D-Galactose (C)
-1.7
-0.6
-0.2
-0.1
-0.1
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-1.4
-1.3
-0.1
+0.2
+0.0
carbon source
D-Glucose (C)
-1.6
-0.7
-0.1
-0.0
-0.1
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-2.2
-0.4
-0.1
+0.2
+0.0
carbon source
D-Galactose (C)
-2.6
+0.4
-0.2
+0.1
-0.1
carbon source
Starch from potato (C)
-1.2
-1.3
-0.3
+0.2
+0.2
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-2.9
+0.7
-0.1
+0.1
+0.0
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-0.6
-1.9
+0.3
+0.0
+0.1
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
-0.5
-2.1
+0.6
-0.1
+0.2
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-1.8
-0.4
-0.0
-0.1
+0.3
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
-0.5
-2.0
+0.4
+0.1
+0.0
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
-2.1
-0.7
+0.4
+0.5
+0.1
carbon source
D-Glucosamine Hydrochloride 2.5 mg/ml (C)
-1.3
-0.8
+0.1
+0.3
-0.0
carbon source
Glycogen; filtered 2.5 mg/ml (C)
-0.1
-2.1
+0.2
+0.2
+0.1
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-1.1
-0.3
+0.4
+0.4
-0.2
carbon source
Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
+0.7
-1.7
+0.0
+0.3
-0.0
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
-1.5
+0.6
+0.7
+0.2
+0.1
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
+0.5
-1.2
+0.3
+0.8
-0.2
carbon source
b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
+0.8
+0.6
-0.6
-0.3
-0.2
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+1.9
-1.7
+0.6
+0.5
-0.0
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+2.0
-1.2
+0.2
+0.5
-0.3
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