Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS18165 and ABI39_RS18170 are separated by 18 nucleotidesABI39_RS18170 and ABI39_RS18175 overlap by 10 nucleotidesABI39_RS18175 and ABI39_RS18180 are separated by 185 nucleotidesABI39_RS18180 and ABI39_RS18185 are separated by 125 nucleotides ABI39_RS18165: ABI39_RS18165 - DUF5024 domain-containing protein, at 4,582,447 to 4,583,061 _RS18165 ABI39_RS18170: ABI39_RS18170 - hypothetical protein, at 4,583,080 to 4,583,646 _RS18170 ABI39_RS18175: ABI39_RS18175 - sigma-70 family RNA polymerase sigma factor, at 4,583,637 to 4,584,107 _RS18175 ABI39_RS18180: ABI39_RS18180 - galactose mutarotase, at 4,584,293 to 4,585,426 _RS18180 ABI39_RS18185: ABI39_RS18185 - DUF3857 domain-containing protein, at 4,585,552 to 4,587,111 _RS18185
Group Condition ABI39_RS18165 ABI39_RS18170 ABI39_RS18175 ABI39_RS18180 ABI39_RS18185
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -1.5 -1.5 -1.1 +0.2 -0.0
carbon source amylopectin from maize (C) -3.8 +0.0 -0.2 -0.0 +0.2
carbon source D-Mannose (C) -1.8 -1.4 +0.2 -0.1 +0.0
carbon source D-Glucose (C) -2.6 -0.3 -0.1 -0.0 +0.0
carbon source beta-Cyclodextrin (C) -1.2 -1.5 -0.3 -0.2 +0.2
carbon source amylopectin from maize (C) -3.8 +0.9 -0.2 -0.1 +0.2
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -1.4 -1.0 -0.5 +0.0 +0.1
carbon source D-Mannose (C) -1.0 -1.6 -0.2 +0.1 +0.1
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -0.8 -1.7 -0.4 +0.2 +0.0
carbon source D-Galactose (C) -1.7 -0.6 -0.2 -0.1 -0.1
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -1.4 -1.3 -0.1 +0.2 +0.0
carbon source D-Glucose (C) -1.6 -0.7 -0.1 -0.0 -0.1
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -2.2 -0.4 -0.1 +0.2 +0.0
carbon source D-Galactose (C) -2.6 +0.4 -0.2 +0.1 -0.1
carbon source Starch from potato (C) -1.2 -1.3 -0.3 +0.2 +0.2
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -2.9 +0.7 -0.1 +0.1 +0.0
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.6 -1.9 +0.3 +0.0 +0.1
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) -0.5 -2.1 +0.6 -0.1 +0.2
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -1.8 -0.4 -0.0 -0.1 +0.3
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) -0.5 -2.0 +0.4 +0.1 +0.0
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -2.1 -0.7 +0.4 +0.5 +0.1
carbon source D-Glucosamine Hydrochloride 2.5 mg/ml (C) -1.3 -0.8 +0.1 +0.3 -0.0
carbon source Glycogen; filtered 2.5 mg/ml (C) -0.1 -2.1 +0.2 +0.2 +0.1
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -1.1 -0.3 +0.4 +0.4 -0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) +0.7 -1.7 +0.0 +0.3 -0.0
carbon source a-Cyclodextrin 2.5 mg/ml (C) -1.5 +0.6 +0.7 +0.2 +0.1
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.5 -1.2 +0.3 +0.8 -0.2
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) +0.8 +0.6 -0.6 -0.3 -0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +1.9 -1.7 +0.6 +0.5 -0.0
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +2.0 -1.2 +0.2 +0.5 -0.3
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