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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS18155 and ABI39_RS18160 are separated by 58 nucleotides
ABI39_RS18160 and ABI39_RS18165 are separated by 201 nucleotides
ABI39_RS18165 and ABI39_RS18170 are separated by 18 nucleotides
ABI39_RS18170 and ABI39_RS18175 overlap by 10 nucleotides
ABI39_RS18155: ABI39_RS18155 - bifunctional nuclease family protein, at 4,580,343 to 4,580,909
_RS18155
ABI39_RS18160: ABI39_RS18160 - MFS transporter, at 4,580,968 to 4,582,245
_RS18160
ABI39_RS18165: ABI39_RS18165 - DUF5024 domain-containing protein, at 4,582,447 to 4,583,061
_RS18165
ABI39_RS18170: ABI39_RS18170 - hypothetical protein, at 4,583,080 to 4,583,646
_RS18170
ABI39_RS18175: ABI39_RS18175 - sigma-70 family RNA polymerase sigma factor, at 4,583,637 to 4,584,107
_RS18175
Group
Condition
ABI39
_RS18155
ABI39
_RS18160
ABI39
_RS18165
ABI39
_RS18170
ABI39
_RS18175
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-3.4
-5.2
-2.2
-0.4
-0.1
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-3.2
-4.8
-1.4
-1.3
-0.1
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-2.4
-4.0
-2.9
+0.7
-0.1
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-3.2
-3.0
-1.8
-0.4
-0.0
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.9
-2.0
-1.5
-1.5
-1.1
carbon source
D-Galactose (C)
-1.1
-2.6
-1.7
-0.6
-0.2
carbon source
D-Galactose (C)
-1.1
-2.4
-2.6
+0.4
-0.2
carbon source
D-Mannose (C)
-1.1
-1.7
-1.0
-1.6
-0.2
carbon source
D-Mannose (C)
-1.1
-1.5
-1.8
-1.4
+0.2
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.5
-2.0
-1.4
-1.0
-0.5
carbon source
D-Glucose (C)
-0.9
-1.3
-2.6
-0.3
-0.1
carbon source
amylopectin from maize (C)
-0.2
-0.4
-3.8
+0.0
-0.2
carbon source
D-Glucose (C)
-0.7
-1.2
-1.6
-0.7
-0.1
carbon source
D-Fructose (C)
-0.7
-2.1
-1.4
+0.2
-0.1
carbon source
D-Fructose (C)
-0.8
-2.1
-0.9
-0.0
-0.1
carbon source
beta-Cyclodextrin (C)
-0.6
-0.2
-1.2
-1.5
-0.3
carbon source
amylopectin from maize (C)
-0.1
-0.1
-3.8
+0.9
-0.2
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
+0.5
-0.1
-0.5
-2.0
+0.4
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
+0.4
+0.3
-2.1
-0.7
+0.4
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
+0.4
+0.1
-0.5
-2.1
+0.6
carbon source
Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C)
+0.7
-0.9
-1.5
+0.5
+0.0
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+1.2
+0.3
-0.6
-1.9
+0.3
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
+0.4
+0.4
-1.5
+0.6
+0.7
carbon source
Glycogen; autoclaved 2.5 mg/ml (C)
-0.6
+2.7
-0.8
-0.8
+0.2
carbon source
Glycogen; filtered 2.5 mg/ml (C)
-0.7
+3.6
-0.1
-2.1
+0.2
carbon source
Glycogen; filtered 2.5 mg/ml (C)
-0.6
+3.4
-0.7
-1.0
-0.1
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
+1.3
+0.1
+0.5
-1.2
+0.3
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.2
+0.3
+1.9
-1.7
+0.6
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.3
+0.0
+2.0
-1.2
+0.2
carbon source
Glycogen; autoclaved 2.5 mg/ml (C)
-0.5
+2.7
-0.6
-0.0
+0.2
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