Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS18155 and ABI39_RS18160 are separated by 58 nucleotidesABI39_RS18160 and ABI39_RS18165 are separated by 201 nucleotidesABI39_RS18165 and ABI39_RS18170 are separated by 18 nucleotidesABI39_RS18170 and ABI39_RS18175 overlap by 10 nucleotides ABI39_RS18155: ABI39_RS18155 - bifunctional nuclease family protein, at 4,580,343 to 4,580,909 _RS18155 ABI39_RS18160: ABI39_RS18160 - MFS transporter, at 4,580,968 to 4,582,245 _RS18160 ABI39_RS18165: ABI39_RS18165 - DUF5024 domain-containing protein, at 4,582,447 to 4,583,061 _RS18165 ABI39_RS18170: ABI39_RS18170 - hypothetical protein, at 4,583,080 to 4,583,646 _RS18170 ABI39_RS18175: ABI39_RS18175 - sigma-70 family RNA polymerase sigma factor, at 4,583,637 to 4,584,107 _RS18175
Group Condition ABI39_RS18155 ABI39_RS18160 ABI39_RS18165 ABI39_RS18170 ABI39_RS18175
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -3.4 -5.2 -2.2 -0.4 -0.1
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -3.2 -4.8 -1.4 -1.3 -0.1
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -2.4 -4.0 -2.9 +0.7 -0.1
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -3.2 -3.0 -1.8 -0.4 -0.0
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.9 -2.0 -1.5 -1.5 -1.1
carbon source D-Galactose (C) -1.1 -2.6 -1.7 -0.6 -0.2
carbon source D-Galactose (C) -1.1 -2.4 -2.6 +0.4 -0.2
carbon source D-Mannose (C) -1.1 -1.7 -1.0 -1.6 -0.2
carbon source D-Mannose (C) -1.1 -1.5 -1.8 -1.4 +0.2
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.5 -2.0 -1.4 -1.0 -0.5
carbon source D-Glucose (C) -0.9 -1.3 -2.6 -0.3 -0.1
carbon source amylopectin from maize (C) -0.2 -0.4 -3.8 +0.0 -0.2
carbon source D-Glucose (C) -0.7 -1.2 -1.6 -0.7 -0.1
carbon source D-Fructose (C) -0.7 -2.1 -1.4 +0.2 -0.1
carbon source D-Fructose (C) -0.8 -2.1 -0.9 -0.0 -0.1
carbon source beta-Cyclodextrin (C) -0.6 -0.2 -1.2 -1.5 -0.3
carbon source amylopectin from maize (C) -0.1 -0.1 -3.8 +0.9 -0.2
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.5 -0.1 -0.5 -2.0 +0.4
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.4 +0.3 -2.1 -0.7 +0.4
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) +0.4 +0.1 -0.5 -2.1 +0.6
carbon source Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) +0.7 -0.9 -1.5 +0.5 +0.0
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +1.2 +0.3 -0.6 -1.9 +0.3
carbon source a-Cyclodextrin 2.5 mg/ml (C) +0.4 +0.4 -1.5 +0.6 +0.7
carbon source Glycogen; autoclaved 2.5 mg/ml (C) -0.6 +2.7 -0.8 -0.8 +0.2
carbon source Glycogen; filtered 2.5 mg/ml (C) -0.7 +3.6 -0.1 -2.1 +0.2
carbon source Glycogen; filtered 2.5 mg/ml (C) -0.6 +3.4 -0.7 -1.0 -0.1
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +1.3 +0.1 +0.5 -1.2 +0.3
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.2 +0.3 +1.9 -1.7 +0.6
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.3 +0.0 +2.0 -1.2 +0.2
carbon source Glycogen; autoclaved 2.5 mg/ml (C) -0.5 +2.7 -0.6 -0.0 +0.2
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