Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS17820 and ABI39_RS17830 are separated by 431 nucleotidesABI39_RS17830 and ABI39_RS17835 overlap by 4 nucleotidesABI39_RS17835 and ABI39_RS17845 are separated by 603 nucleotidesABI39_RS17845 and ABI39_RS17850 are separated by 242 nucleotides ABI39_RS17820: ABI39_RS17820 - polyamine ABC transporter ATP-binding protein, at 4,494,536 to 4,495,930 _RS17820 ABI39_RS17830: ABI39_RS17830 - histidine kinase, at 4,496,362 to 4,496,652 _RS17830 ABI39_RS17835: ABI39_RS17835 - PAS domain-containing protein, at 4,496,649 to 4,497,392 _RS17835 ABI39_RS17845: ABI39_RS17845 - AhpC/TSA family protein, at 4,497,996 to 4,499,087 _RS17845 ABI39_RS17850: ABI39_RS17850 - alpha-glucan family phosphorylase, at 4,499,330 to 4,501,894 _RS17850
Group Condition ABI39_RS17820 ABI39_RS17830 ABI39_RS17835 ABI39_RS17845 ABI39_RS17850
carbon source Glycogen; filtered 2.5 mg/ml (C) -0.4 -0.6 -0.0 +0.9 -3.2
carbon source Glycogen; autoclaved 2.5 mg/ml (C) -0.2 -0.5 +0.1 +0.4 -3.1
carbon source B-glucan from yeast (C) +0.2 +0.0 -0.0 +0.3 -3.6
carbon source Glycogen; autoclaved 2.5 mg/ml (C) -0.2 -0.6 -0.1 +1.1 -3.1
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 -0.6 +0.2 -0.6 -2.1
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.1 -0.5 +0.3 +0.1 -2.8
carbon source B-glucan from yeast (C) +0.2 -0.3 -0.2 +0.3 -2.9
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 -0.5 +0.3 -0.5 -2.0
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.0 -0.4 +0.3 +0.5 -2.8
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) +0.2 +0.1 +0.2 -0.0 -2.3
carbon source Glycogen; filtered 2.5 mg/ml (C) -0.3 -0.5 -0.0 +1.5 -2.5
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) +0.2 +0.1 +0.1 +0.1 -2.3
carbon source beta-Cyclodextrin (C) +0.1 -0.4 +0.0 +0.4 -1.9
carbon source a-Cyclodextrin (C) +0.1 -0.3 +0.1 +0.4 -1.9
carbon source a-Cyclodextrin (C) +0.1 -0.0 +0.1 +0.5 -2.0
carbon source a-Cyclodextrin 2.5 mg/ml (C) +0.4 +0.1 +0.2 +0.5 -2.2
carbon source a-Cyclodextrin 2.5 mg/ml (C) +0.1 -0.1 +0.1 +1.1 -1.5
carbon source beta-Cyclodextrin 2.5 mg/ml (C) +0.2 +0.5 +0.1 +0.5 -1.4
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.2 -0.7 -0.1 +1.5 -0.3
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.2 -0.1 +0.4 +1.3 -1.5
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.3 -0.9 -0.0 +1.6 +0.2
carbon source amylopectin from maize (C) -0.2 +0.5 +0.2 +1.3 -1.2
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.2 +0.0 +0.5 +1.2 -0.7
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.6 +0.7 +0.3 +1.4 -1.0
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) -0.0 -0.2 +0.4 +1.2 +0.7
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) +0.2 +0.4 +0.5 +1.4 -0.3
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.5 -0.3 +0.1 +1.2 +0.8
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.6 +1.0 +0.3 +1.3 -0.7
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.2 +0.4 -0.2 +1.3 +0.9
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) +0.5 +0.6 +0.3 +1.6 -0.2
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