Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS17665 and ABI39_RS17670 are separated by 15 nucleotidesABI39_RS17670 and ABI39_RS17675 are separated by 4 nucleotidesABI39_RS17675 and ABI39_RS17680 are separated by 331 nucleotidesABI39_RS17680 and ABI39_RS17685 are separated by 5 nucleotides ABI39_RS17665: ABI39_RS17665 - ABC transporter ATP-binding protein, at 4,466,271 to 4,466,981 _RS17665 ABI39_RS17670: ABI39_RS17670 - efflux RND transporter periplasmic adaptor subunit, at 4,466,997 to 4,468,247 _RS17670 ABI39_RS17675: ABI39_RS17675 - TolC family protein, at 4,468,252 to 4,469,559 _RS17675 ABI39_RS17680: ABI39_RS17680 - sigma-54-dependent Fis family transcriptional regulator, at 4,469,891 to 4,471,222 _RS17680 ABI39_RS17685: ABI39_RS17685 - PAS domain-containing protein, at 4,471,228 to 4,472,550 _RS17685
Group Condition ABI39_RS17665 ABI39_RS17670 ABI39_RS17675 ABI39_RS17680 ABI39_RS17685
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.9 +0.4 +0.3 -0.6 -0.3
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -1.2 +0.2 -0.0 -0.1 +0.1
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.9 +0.3 -0.3 -0.4 +0.2
carbon source N-acetylneuraminic (C) -0.5 +0.1 -0.5 +0.1 +0.0
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.5 -0.4 +0.3 -0.1 -0.0
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -1.0 +0.6 -0.0 -0.1 +0.1
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) +0.2 -0.3 -0.5 -0.0 +0.2
carbon source beta-Cyclodextrin 2.5 mg/ml (C) -0.5 +0.3 -0.2 -0.1 +0.0
carbon source a-Cyclodextrin 2.5 mg/ml (C) -0.5 +0.5 -0.0 -0.2 -0.1
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) -0.6 +0.4 -0.0 -0.0 +0.1
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) -0.7 -0.1 +0.4 +0.2 +0.2
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -0.7 +0.3 +0.2 +0.3 +0.1
carbon source D-Galactose (C) -0.4 -0.1 -0.1 +0.5 +0.2
carbon source amylopectin from maize (C) -0.4 +0.2 -0.5 +0.2 +0.7
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -0.6 +0.0 +0.2 +0.3 +0.4
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -0.2 +0.2 -0.1 +0.3 +0.2
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.5 -0.3 +0.3 +0.1 -0.0
carbon source beta-Cyclodextrin (C) +0.6 -0.2 +0.1 +0.2 -0.1
carbon source Galactan from Potato (C) +0.8 -0.3 +0.1 -0.2 +0.2
carbon source D-Glucosamine Hydrochloride (C) -0.3 +0.2 +0.2 +0.2 +0.2
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -0.1 +0.6 -0.2 +0.2 +0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.3 -0.2 +0.4 +0.6 +0.3
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.4 +0.2 +0.2 -0.2 +0.2
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.2 +0.5 +0.2 +0.2 +0.3
carbon source amylopectin from maize (C) -0.3 +0.1 +0.2 +0.6 +0.5
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) +0.2 +0.4 +0.5 -0.1 +0.1
carbon source Starch from potato (C) +0.5 -0.1 -0.0 +0.3 +0.4
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) +0.2 +0.4 +0.3 +0.4 +0.3
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.8 -0.3 +0.6 +0.5 +0.1
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.9 +0.0 +0.7 +0.4 +0.6
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