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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS17665 and ABI39_RS17670 are separated by 15 nucleotides
ABI39_RS17670 and ABI39_RS17675 are separated by 4 nucleotides
ABI39_RS17675 and ABI39_RS17680 are separated by 331 nucleotides
ABI39_RS17680 and ABI39_RS17685 are separated by 5 nucleotides
ABI39_RS17665: ABI39_RS17665 - ABC transporter ATP-binding protein, at 4,466,271 to 4,466,981
_RS17665
ABI39_RS17670: ABI39_RS17670 - efflux RND transporter periplasmic adaptor subunit, at 4,466,997 to 4,468,247
_RS17670
ABI39_RS17675: ABI39_RS17675 - TolC family protein, at 4,468,252 to 4,469,559
_RS17675
ABI39_RS17680: ABI39_RS17680 - sigma-54-dependent Fis family transcriptional regulator, at 4,469,891 to 4,471,222
_RS17680
ABI39_RS17685: ABI39_RS17685 - PAS domain-containing protein, at 4,471,228 to 4,472,550
_RS17685
Group
Condition
ABI39
_RS17665
ABI39
_RS17670
ABI39
_RS17675
ABI39
_RS17680
ABI39
_RS17685
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.9
+0.4
+0.3
-0.6
-0.3
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-1.2
+0.2
-0.0
-0.1
+0.1
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
-0.9
+0.3
-0.3
-0.4
+0.2
carbon source
N-acetylneuraminic (C)
-0.5
+0.1
-0.5
+0.1
+0.0
carbon source
polygalacturonic; autoclaved 2.5 mg/ml (C)
-0.5
-0.4
+0.3
-0.1
-0.0
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-1.0
+0.6
-0.0
-0.1
+0.1
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
+0.2
-0.3
-0.5
-0.0
+0.2
carbon source
beta-Cyclodextrin 2.5 mg/ml (C)
-0.5
+0.3
-0.2
-0.1
+0.0
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
-0.5
+0.5
-0.0
-0.2
-0.1
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
-0.6
+0.4
-0.0
-0.0
+0.1
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
-0.7
-0.1
+0.4
+0.2
+0.2
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
-0.7
+0.3
+0.2
+0.3
+0.1
carbon source
D-Galactose (C)
-0.4
-0.1
-0.1
+0.5
+0.2
carbon source
amylopectin from maize (C)
-0.4
+0.2
-0.5
+0.2
+0.7
carbon source
Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
-0.6
+0.0
+0.2
+0.3
+0.4
carbon source
Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
-0.2
+0.2
-0.1
+0.3
+0.2
carbon source
Galactan from Potato; autoclaved 2.5 mg/ml (C)
+0.5
-0.3
+0.3
+0.1
-0.0
carbon source
beta-Cyclodextrin (C)
+0.6
-0.2
+0.1
+0.2
-0.1
carbon source
Galactan from Potato (C)
+0.8
-0.3
+0.1
-0.2
+0.2
carbon source
D-Glucosamine Hydrochloride (C)
-0.3
+0.2
+0.2
+0.2
+0.2
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
-0.1
+0.6
-0.2
+0.2
+0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-0.3
-0.2
+0.4
+0.6
+0.3
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
+0.4
+0.2
+0.2
-0.2
+0.2
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.2
+0.5
+0.2
+0.2
+0.3
carbon source
amylopectin from maize (C)
-0.3
+0.1
+0.2
+0.6
+0.5
carbon source
b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
+0.2
+0.4
+0.5
-0.1
+0.1
carbon source
Starch from potato (C)
+0.5
-0.1
-0.0
+0.3
+0.4
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
+0.2
+0.4
+0.3
+0.4
+0.3
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.8
-0.3
+0.6
+0.5
+0.1
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
+0.9
+0.0
+0.7
+0.4
+0.6
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