Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS17610 and ABI39_RS17615 are separated by 80 nucleotidesABI39_RS17615 and ABI39_RS17620 overlap by 1 nucleotidesABI39_RS17620 and ABI39_RS17625 are separated by 74 nucleotidesABI39_RS17625 and ABI39_RS17630 are separated by 261 nucleotides ABI39_RS17610: ABI39_RS17610 - sensor histidine kinase, at 4,448,467 to 4,449,768 _RS17610 ABI39_RS17615: ABI39_RS17615 - UvrD-helicase domain-containing protein, at 4,449,849 to 4,453,025 _RS17615 ABI39_RS17620: ABI39_RS17620 - PD-(D/E)XK nuclease family protein, at 4,453,025 to 4,455,904 _RS17620 ABI39_RS17625: ABI39_RS17625 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 4,455,979 to 4,456,806 _RS17625 ABI39_RS17630: ABI39_RS17630 - replicative DNA helicase, at 4,457,068 to 4,458,624 _RS17630
Group Condition ABI39_RS17610 ABI39_RS17615 ABI39_RS17620 ABI39_RS17625 ABI39_RS17630
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -1.1 N.D. N.D. N.D. N.D.
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -1.0 N.D. N.D. N.D. N.D.
carbon source Galactan from Potato (C) -0.7 N.D. N.D. N.D. N.D.
carbon source D-Glucosamine Hydrochloride 2.5 mg/ml (C) +0.6 N.D. N.D. N.D. N.D.
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) +0.6 N.D. N.D. N.D. N.D.
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) +0.6 N.D. N.D. N.D. N.D.
carbon source D-Galactose (C) +0.6 N.D. N.D. N.D. N.D.
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) +0.7 N.D. N.D. N.D. N.D.
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) +0.7 N.D. N.D. N.D. N.D.
carbon source D-Glucose 5 mg/ml (C) +0.7 N.D. N.D. N.D. N.D.
carbon source beta-Cyclodextrin 2.5 mg/ml (C) +0.7 N.D. N.D. N.D. N.D.
carbon source D-Fructose (C) +0.7 N.D. N.D. N.D. N.D.
carbon source D-Xylose 2.5 mg/ml (C) +0.7 N.D. N.D. N.D. N.D.
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.7 N.D. N.D. N.D. N.D.
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.7 N.D. N.D. N.D. N.D.
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.8 N.D. N.D. N.D. N.D.
carbon source Mannose-6-Phosphate (C) +0.8 N.D. N.D. N.D. N.D.
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.8 N.D. N.D. N.D. N.D.
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.8 N.D. N.D. N.D. N.D.
carbon source polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) +0.8 N.D. N.D. N.D. N.D.
carbon source Mucin from porcine stomach,Type II; autoclaved 2.5 mg/ml (C) +0.8 N.D. N.D. N.D. N.D.
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) +0.9 N.D. N.D. N.D. N.D.
carbon source polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) +1.0 N.D. N.D. N.D. N.D.
carbon source beta-Cyclodextrin 2.5 mg/ml (C) +1.0 N.D. N.D. N.D. N.D.
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) +1.1 N.D. N.D. N.D. N.D.
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +1.1 N.D. N.D. N.D. N.D.
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +1.1 N.D. N.D. N.D. N.D.
carbon source a-Cyclodextrin 2.5 mg/ml (C) +1.2 N.D. N.D. N.D. N.D.
carbon source Beta-Lactose 2.5 mg/ml (C) +1.3 N.D. N.D. N.D. N.D.
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +1.7 N.D. N.D. N.D. N.D.
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