Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS17550 and ABI39_RS17555 are separated by 52 nucleotidesABI39_RS17555 and ABI39_RS17560 overlap by 1 nucleotidesABI39_RS17560 and ABI39_RS17565 overlap by 1 nucleotidesABI39_RS17565 and ABI39_RS17570 are separated by 11 nucleotides ABI39_RS17550: ABI39_RS17550 - polysaccharide pyruvyl transferase family protein, at 4,436,717 to 4,437,730 _RS17550 ABI39_RS17555: ABI39_RS17555 - glycosyltransferase family 4 protein, at 4,437,783 to 4,438,892 _RS17555 ABI39_RS17560: ABI39_RS17560 - glycosyltransferase family 2 protein, at 4,438,892 to 4,439,767 _RS17560 ABI39_RS17565: ABI39_RS17565 - O-antigen ligase family protein, at 4,439,767 to 4,441,026 _RS17565 ABI39_RS17570: ABI39_RS17570 - alpha-1,2-fucosyltransferase, at 4,441,038 to 4,441,829 _RS17570
Group Condition ABI39_RS17550 ABI39_RS17555 ABI39_RS17560 ABI39_RS17565 ABI39_RS17570
carbon source a-Cyclodextrin 2.5 mg/ml (C) -0.3 -0.5 -0.8 -0.2 -0.3
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -1.0 -0.7 +0.2 -0.2 -0.2
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.7 -0.2 -0.2 -0.2 -0.6
carbon source N-acetylneuraminic (C) -0.9 -0.3 -0.2 -0.1 -0.1
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) -0.6 -0.5 -0.3 -0.0 -0.1
carbon source N-acetylneuraminic (C) -0.2 -0.4 -0.4 -0.2 +0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.0 +0.2 -0.5 +0.4 -0.6
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) +0.5 +0.2 -0.4 +0.3 -0.4
carbon source Mannose-6-Phosphate (C) +0.5 +0.5 +0.4 +0.2 -0.3
carbon source Mannose-6-Phosphate (C) +0.4 +0.6 +0.5 +0.1 -0.1
carbon source Fructose-6-phosphate (C) +0.4 +0.4 +0.4 +0.1 +0.3
carbon source polygalacturonic (ultrapure) (C) +0.3 +0.3 +0.3 +0.4 +0.1
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) +0.4 +0.3 +0.5 +0.6 -0.1
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.6 +0.4 +0.2 +0.5 +0.0
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.4 +0.2 +0.3 +0.2 +0.5
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.9 +0.2 +0.3 +0.1 +0.2
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +1.0 +0.2 +0.2 +0.2 +0.3
carbon source Glycogen; filtered 2.5 mg/ml (C) +0.5 +0.7 +0.3 +0.5 +0.1
carbon source Glycogen; autoclaved 2.5 mg/ml (C) +0.6 +0.7 +0.4 +0.6 -0.1
carbon source Fructose-6-phosphate (C) +0.6 +0.5 +0.6 +0.2 +0.4
carbon source Glycogen; autoclaved 2.5 mg/ml (C) +0.7 +0.8 +0.4 +0.5 +0.0
carbon source Glycogen; filtered 2.5 mg/ml (C) +0.6 +0.8 +0.6 +0.5 -0.0
carbon source Galactose 1-phosphate dipotassium salt (C) +0.8 +0.9 +0.9 +0.2 +0.0
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) +1.0 +1.1 +0.8 +0.2 -0.1
carbon source Galactose 1-phosphate dipotassium salt (C) +0.8 +0.9 +0.9 +0.4 +0.2
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) +1.1 +1.0 +0.9 +0.3 +0.1
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) +1.4 +1.3 +1.1 +0.3 +0.3
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) +1.3 +1.3 +1.5 +0.2 +0.1
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) +1.5 +1.7 +1.7 +1.3 +0.2
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) +1.7 +1.9 +2.0 +1.7 +0.4
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ABI39_RS17550
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