Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS17425 and ABI39_RS17430 are separated by 48 nucleotidesABI39_RS17430 and ABI39_RS17435 are separated by 127 nucleotidesABI39_RS17435 and ABI39_RS17440 overlap by 29 nucleotidesABI39_RS17440 and ABI39_RS17445 are separated by 123 nucleotides ABI39_RS17425: ABI39_RS17425 - MATE family efflux transporter, at 4,400,104 to 4,401,447 _RS17425 ABI39_RS17430: ABI39_RS17430 - OmpA family protein, at 4,401,496 to 4,402,215 _RS17430 ABI39_RS17435: ABI39_RS17435 - monofunctional biosynthetic peptidoglycan transglycosylase, at 4,402,343 to 4,403,065 _RS17435 ABI39_RS17440: ABI39_RS17440 - DUF1460 domain-containing protein, at 4,403,037 to 4,403,921 _RS17440 ABI39_RS17445: ABI39_RS17445 - oxaloacetate decarboxylase, at 4,404,045 to 4,405,820 _RS17445
Group Condition ABI39_RS17425 ABI39_RS17430 ABI39_RS17435 ABI39_RS17440 ABI39_RS17445
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.4 -1.3 -0.0 -0.2 -0.2
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.1 -1.2 -0.1 -0.3 +0.0
carbon source polygalacturonic (ultrapure) (C) -0.3 -0.5 +0.1 -0.3 -0.0
carbon source Pectin from apple; autoclaved 2.5 mg/ml (C) +0.2 -0.5 -0.1 -0.3 -0.2
carbon source Amylopectin from Potato (C) -0.0 -0.8 +0.0 -0.2 +0.3
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.2 -0.8 +0.3 -0.3 +0.6
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.2 -0.4 +0.5 +0.2 -0.4
carbon source NAG 2.5 mg/ml (C) -0.0 -0.7 -0.2 +0.2 +0.3
carbon source Beta-Lactose 2.5 mg/ml (C) -0.0 -0.7 -0.1 +0.4 +0.1
carbon source Pectic galactan from potato (C) -0.2 +0.1 +0.3 -0.1 -0.4
carbon source Beta-Lactose 2.5 mg/ml (C) +0.1 -0.7 +0.0 +0.3 +0.2
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 -0.8 +0.6 -0.1 +0.2
carbon source Pectin from citrus peel; autoclaved 2.5 mg/ml (C) +0.1 -0.0 +0.5 -0.4 -0.3
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) +0.1 -0.4 +0.3 -0.3 +0.4
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.1 +0.0 +0.6 -0.6 +0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.2 -0.7 +0.6 +0.0 -0.0
carbon source a-Cyclodextrin 2.5 mg/ml (C) +0.0 -0.4 +0.7 -0.3 +0.2
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.2 -0.2 +0.4 -0.3 +0.3
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.1 -0.0 +0.6 -0.4 +0.1
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.3 -0.4 +0.5 +0.1 +0.2
carbon source Galactan from Potato (C) +0.5 +0.1 +0.5 -0.1 -0.3
carbon source amylopectin from maize (C) +0.3 +0.4 +0.4 -0.7 +0.5
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.4 +0.5 +0.4 -0.6 +0.1
carbon source Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) -0.1 +0.2 +0.6 +0.3 -0.1
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.2 -0.0 +0.8 -0.2 +0.3
carbon source amylopectin from maize (C) +0.4 +0.2 +0.6 -0.2 +0.1
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) +0.2 +0.1 +0.6 -0.1 +0.3
carbon source a-Cyclodextrin 2.5 mg/ml (C) +0.3 +0.2 +0.3 -0.0 +0.3
carbon source Red Arabinan from sugar-beet; filtered 5 mg/ml (C) +0.2 +0.2 +0.5 +0.2 +0.3
carbon source Amylopectin from Potato (C) +0.1 -0.1 +0.7 +0.3 +0.4
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