Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS17060 and ABI39_RS17065 are separated by 299 nucleotidesABI39_RS17065 and ABI39_RS17070 overlap by 4 nucleotidesABI39_RS17070 and ABI39_RS17075 are separated by 2 nucleotidesABI39_RS17075 and ABI39_RS17080 are separated by 144 nucleotides ABI39_RS17060: ABI39_RS17060 - sigma-54-dependent Fis family transcriptional regulator, at 4,322,254 to 4,323,591 _RS17060 ABI39_RS17065: ABI39_RS17065 - glycine betaine/L-proline ABC transporter ATP-binding protein, at 4,323,891 to 4,325,117 _RS17065 ABI39_RS17070: ABI39_RS17070 - proline/glycine betaine ABC transporter permease, at 4,325,114 to 4,325,938 _RS17070 ABI39_RS17075: ABI39_RS17075 - glycine betaine ABC transporter substrate-binding protein, at 4,325,941 to 4,326,783 _RS17075 ABI39_RS17080: ABI39_RS17080 - DMT family transporter, at 4,326,928 to 4,327,836 _RS17080
Group Condition ABI39_RS17060 ABI39_RS17065 ABI39_RS17070 ABI39_RS17075 ABI39_RS17080
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) -0.6 -0.1 -0.1 -0.2 -0.4
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) -0.5 -0.0 -0.5 -0.3 -0.2
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.6 -0.1 -0.4 +0.0 -0.4
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) -0.4 -0.1 -0.2 +0.1 -0.8
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) -0.4 -0.4 -0.2 -0.1 -0.2
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.4 -0.8 +0.1 +0.2 -0.2
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) -0.3 -0.4 -0.2 +0.1 -0.1
carbon source Glycogen; autoclaved 2.5 mg/ml (C) -0.4 -0.0 -0.3 +0.1 -0.3
carbon source B-glucan from yeast (C) -0.1 -0.2 -0.6 +0.1 -0.0
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.2 -0.1 -0.6 +0.1 -0.1
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.5 -0.1 -0.5 -0.2 -0.5
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.4 +0.0 -0.4 +0.2 -0.2
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.4 -0.5 -0.1 +0.3 +0.0
carbon source amylopectin from maize (C) -0.1 -0.4 -0.1 +0.3 -0.5
carbon source Pectin from apple; filtered 1 mg/ml (C) -0.7 -0.1 +0.1 +0.3 -0.3
carbon source Starch from potato (C) -0.3 -0.4 +0.1 -0.2 +0.2
carbon source Red Arabinan from sugar-beet; filtered 5 mg/ml (C) -0.0 -0.2 -0.5 +0.3 -0.2
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -0.3 -0.5 -0.0 +0.4 -0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.3 +0.1 -0.2 +0.3 -0.3
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.2 +0.3 -0.4 -0.1 -0.3
carbon source a-Cyclodextrin 2.5 mg/ml (C) -0.2 -0.4 -0.2 +0.3 +0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.2 +0.0 -0.1 +0.7 -0.6
carbon source Fructose-6-phosphate (C) -0.0 -0.4 +0.1 +0.4 -0.2
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) -0.4 +0.2 -0.1 +0.2 -0.1
carbon source Galactan from Potato (C) -0.3 +0.3 +0.6 -0.3 -0.3
carbon source N-acetylneuraminic (C) -0.4 +0.1 +0.3 +0.1 +0.2
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.4 +0.0 +0.3 +0.4 +0.1
carbon source D-Fructose 2.5 mg/ml (C) +0.1 -0.2 -0.0 +0.4 +0.3
carbon source Galactan from Potato (C) +0.1 +0.2 +0.2 +0.3 -0.3
carbon source D-Fructose 2.5 mg/ml (C) +0.1 -0.2 +0.1 +0.5 +0.3
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