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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS17040 and ABI39_RS17045 are separated by 13 nucleotides
ABI39_RS17045 and ABI39_RS17050 are separated by 33 nucleotides
ABI39_RS17050 and ABI39_RS22360 are separated by 26 nucleotides
ABI39_RS22360 and ABI39_RS17055 are separated by 268 nucleotides
ABI39_RS17040: ABI39_RS17040 - K(+)-transporting ATPase subunit C, at 4,316,556 to 4,317,125
_RS17040
ABI39_RS17045: ABI39_RS17045 - potassium-transporting ATPase subunit KdpB, at 4,317,139 to 4,319,172
_RS17045
ABI39_RS17050: ABI39_RS17050 - potassium-transporting ATPase subunit KdpA, at 4,319,206 to 4,320,912
_RS17050
ABI39_RS22360: ABI39_RS22360 - potassium-transporting ATPase subunit F, at 4,320,939 to 4,321,019
_RS22360
ABI39_RS17055: ABI39_RS17055 - O-acetyl-ADP-ribose deacetylase, at 4,321,288 to 4,321,914
_RS17055
Group
Condition
ABI39
_RS17040
ABI39
_RS17045
ABI39
_RS17050
ABI39
_RS22360
ABI39
_RS17055
carbon source
D-Raffinose (C)
-0.2
-0.2
-0.0
-0.9
-0.3
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
+0.0
-0.1
+0.1
-1.3
-0.3
carbon source
B-glucan from yeast (C)
-0.2
-0.3
-0.0
-1.1
+0.0
carbon source
NAG (C)
-0.4
-0.0
+0.0
-0.7
-0.3
carbon source
beta-Cyclodextrin (C)
+0.1
-0.0
+0.1
-1.3
-0.1
carbon source
Locust bean gum; autoclaved 2.5 mg/ml (C)
-0.2
+0.1
-0.2
-0.8
-0.2
carbon source
Dextrin from potato starch; autoclaved 2.5 mg/ml (C)
-0.2
+0.3
+0.0
-1.0
-0.4
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
-0.0
-0.1
+0.2
-1.0
-0.0
carbon source
D-Glucosamine Hydrochloride 2.5 mg/ml (C)
+0.3
+0.1
+0.1
-1.0
-0.1
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
+0.3
+0.2
+0.4
-1.2
-0.3
carbon source
D-Maltose (C)
-0.0
+0.0
+0.1
-1.0
+0.3
carbon source
B-glucan from yeast; autoclaved 2.5 mg/ml (C)
+0.3
+0.1
+0.0
-0.8
-0.2
carbon source
Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
+0.3
-0.0
+0.2
-0.4
-0.4
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.4
+0.1
-0.2
+0.8
-0.6
carbon source
Pectin from apple; filtered 1 mg/ml (C)
-0.2
+0.4
+0.3
-0.4
-0.2
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
+0.5
-0.1
+0.2
-0.5
-0.2
carbon source
Pectin from apple; autoclaved 2.5 mg/ml (C)
+0.2
+0.2
-0.0
+0.3
-0.7
carbon source
Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
+0.1
+0.4
+0.3
-0.6
-0.2
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
+0.5
+0.3
-0.0
+0.2
-0.9
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
+0.1
+0.3
+0.4
-0.6
-0.1
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.3
+0.4
+0.2
-0.3
+0.3
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.3
+0.2
-0.0
+1.1
-0.3
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
-0.1
+0.2
+0.6
+0.4
-0.5
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.3
+0.3
+0.1
+0.5
-0.4
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.2
+0.3
+0.2
+0.2
+0.6
carbon source
polygalacturonic; autoclaved 2.5 mg/ml (C)
+0.2
+0.1
+0.3
+0.8
-0.3
carbon source
NAG 2.5 mg/ml (C)
-0.1
+0.3
+0.1
+0.7
+0.3
carbon source
Galactan from Potato (C)
+0.2
+0.6
+0.4
+0.7
-0.6
carbon source
Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
-0.1
+0.5
+0.4
+0.6
+0.2
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-0.3
+1.2
+0.6
+1.1
-0.4
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