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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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500 nt
ABI39_RS16840 and ABI39_RS16845 are separated by 62 nucleotides
ABI39_RS16845 and ABI39_RS16850 are separated by 38 nucleotides
ABI39_RS16850 and ABI39_RS16860 are separated by 75 nucleotides
ABI39_RS16860 and ABI39_RS16865 are separated by 764 nucleotides
ABI39_RS16840: ABI39_RS16840 - glycosyltransferase family 4 protein, at 4,270,767 to 4,271,966
_RS16840
ABI39_RS16845: ABI39_RS16845 - alginate lyase family protein, at 4,272,029 to 4,273,878
_RS16845
ABI39_RS16850: ABI39_RS16850 - YjbH domain-containing protein, at 4,273,917 to 4,274,759
_RS16850
ABI39_RS16860: ABI39_RS16860 - ATP-binding protein, at 4,274,835 to 4,276,402
_RS16860
ABI39_RS16865: ABI39_RS16865 - DEAD/DEAH box helicase, at 4,277,167 to 4,279,458
_RS16865
Group
Condition
ABI39
_RS16840
ABI39
_RS16845
ABI39
_RS16850
ABI39
_RS16860
ABI39
_RS16865
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
-0.2
-0.1
-0.2
+0.1
-0.6
carbon source
Glycogen; filtered 2.5 mg/ml (C)
+0.0
+0.1
-0.3
-0.1
-0.6
carbon source
Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C)
+0.1
+0.0
-0.2
-0.2
-0.5
carbon source
amylopectin from maize (C)
+0.2
+0.3
-0.1
-0.1
-0.5
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
+0.4
+0.3
-0.2
-0.2
-0.5
carbon source
b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
+0.1
+0.2
-0.0
+0.2
-0.6
carbon source
Glucose-6-Phosphate (C)
+0.3
+0.1
+0.1
-0.0
-0.5
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
+0.2
+0.3
+0.1
-0.1
-0.5
carbon source
polygalacturonic; autoclaved 2.5 mg/ml (C)
+0.1
+0.3
+0.1
-0.2
-0.2
carbon source
Amylopectin from Potato (C)
-0.2
-0.1
+0.3
+0.3
-0.1
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
+0.1
+0.4
-0.2
-0.2
+0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.5
+0.3
+0.1
+0.3
-0.8
carbon source
Dextrin from potato starch; autoclaved 2.5 mg/ml (C)
+0.1
+0.3
+0.4
-0.1
-0.2
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
+0.5
+0.2
+0.1
-0.3
-0.0
carbon source
Galactan from Potato (C)
+0.4
+0.3
-0.2
-0.0
+0.2
carbon source
Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
+0.1
+0.2
-0.2
+0.2
+0.3
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.2
+0.1
+0.0
+0.2
+0.5
carbon source
Pectin from apple; autoclaved 2.5 mg/ml (C)
+0.1
+0.1
+0.3
+0.3
-0.2
carbon source
D-Mannose (C)
+0.2
+0.2
+0.2
-0.2
+0.3
carbon source
Inulin from chicory; autoclaved 2.5 mg/ml (C)
+0.2
+0.1
+0.3
+0.3
-0.2
carbon source
Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
+0.2
+0.2
+0.4
+0.1
-0.1
carbon source
polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)
+0.2
+0.2
+0.4
+0.1
-0.2
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.3
+0.2
+0.3
-0.3
+0.2
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-0.1
+0.2
+0.2
+0.3
+0.2
carbon source
Xylan from Beechwood (C)
+0.2
+0.3
+0.2
-0.1
+0.2
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
+0.2
-0.2
+0.8
+0.1
-0.0
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.1
+0.6
+0.2
-0.1
+0.2
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
+0.4
+0.3
+0.4
-0.3
+0.2
carbon source
Fructose-6-phosphate (C)
+0.3
+0.1
+0.3
+0.4
+0.2
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
+0.2
+0.3
+0.2
-0.0
+0.5
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