Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS16840 and ABI39_RS16845 are separated by 62 nucleotidesABI39_RS16845 and ABI39_RS16850 are separated by 38 nucleotidesABI39_RS16850 and ABI39_RS16860 are separated by 75 nucleotidesABI39_RS16860 and ABI39_RS16865 are separated by 764 nucleotides ABI39_RS16840: ABI39_RS16840 - glycosyltransferase family 4 protein, at 4,270,767 to 4,271,966 _RS16840 ABI39_RS16845: ABI39_RS16845 - alginate lyase family protein, at 4,272,029 to 4,273,878 _RS16845 ABI39_RS16850: ABI39_RS16850 - YjbH domain-containing protein, at 4,273,917 to 4,274,759 _RS16850 ABI39_RS16860: ABI39_RS16860 - ATP-binding protein, at 4,274,835 to 4,276,402 _RS16860 ABI39_RS16865: ABI39_RS16865 - DEAD/DEAH box helicase, at 4,277,167 to 4,279,458 _RS16865
Group Condition ABI39_RS16840 ABI39_RS16845 ABI39_RS16850 ABI39_RS16860 ABI39_RS16865
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) -0.2 -0.1 -0.2 +0.1 -0.6
carbon source Glycogen; filtered 2.5 mg/ml (C) +0.0 +0.1 -0.3 -0.1 -0.6
carbon source Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) +0.1 +0.0 -0.2 -0.2 -0.5
carbon source amylopectin from maize (C) +0.2 +0.3 -0.1 -0.1 -0.5
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.4 +0.3 -0.2 -0.2 -0.5
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) +0.1 +0.2 -0.0 +0.2 -0.6
carbon source Glucose-6-Phosphate (C) +0.3 +0.1 +0.1 -0.0 -0.5
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.2 +0.3 +0.1 -0.1 -0.5
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) +0.1 +0.3 +0.1 -0.2 -0.2
carbon source Amylopectin from Potato (C) -0.2 -0.1 +0.3 +0.3 -0.1
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) +0.1 +0.4 -0.2 -0.2 +0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.5 +0.3 +0.1 +0.3 -0.8
carbon source Dextrin from potato starch; autoclaved 2.5 mg/ml (C) +0.1 +0.3 +0.4 -0.1 -0.2
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.5 +0.2 +0.1 -0.3 -0.0
carbon source Galactan from Potato (C) +0.4 +0.3 -0.2 -0.0 +0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) +0.1 +0.2 -0.2 +0.2 +0.3
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.2 +0.1 +0.0 +0.2 +0.5
carbon source Pectin from apple; autoclaved 2.5 mg/ml (C) +0.1 +0.1 +0.3 +0.3 -0.2
carbon source D-Mannose (C) +0.2 +0.2 +0.2 -0.2 +0.3
carbon source Inulin from chicory; autoclaved 2.5 mg/ml (C) +0.2 +0.1 +0.3 +0.3 -0.2
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) +0.2 +0.2 +0.4 +0.1 -0.1
carbon source polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) +0.2 +0.2 +0.4 +0.1 -0.2
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.3 +0.2 +0.3 -0.3 +0.2
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.1 +0.2 +0.2 +0.3 +0.2
carbon source Xylan from Beechwood (C) +0.2 +0.3 +0.2 -0.1 +0.2
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) +0.2 -0.2 +0.8 +0.1 -0.0
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 +0.6 +0.2 -0.1 +0.2
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.4 +0.3 +0.4 -0.3 +0.2
carbon source Fructose-6-phosphate (C) +0.3 +0.1 +0.3 +0.4 +0.2
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.2 +0.3 +0.2 -0.0 +0.5
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