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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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500 nt
ABI39_RS16765 and ABI39_RS16770 are separated by 33 nucleotides
ABI39_RS16770 and ABI39_RS16775 are separated by 2 nucleotides
ABI39_RS16775 and ABI39_RS16780 are separated by 5 nucleotides
ABI39_RS16780 and ABI39_RS16785 are separated by 18 nucleotides
ABI39_RS16765: ABI39_RS16765 - SDR family oxidoreductase, at 4,255,649 to 4,256,404
_RS16765
ABI39_RS16770: ABI39_RS16770 - acyl carrier protein, at 4,256,438 to 4,256,665
_RS16770
ABI39_RS16775: ABI39_RS16775 - ketoacyl-ACP synthase III, at 4,256,668 to 4,257,747
_RS16775
ABI39_RS16780: ABI39_RS16780 - MBL fold metallo-hydrolase, at 4,257,753 to 4,258,388
_RS16780
ABI39_RS16785: ABI39_RS16785 - AMP-binding protein, at 4,258,407 to 4,259,924
_RS16785
Group
Condition
ABI39
_RS16765
ABI39
_RS16770
ABI39
_RS16775
ABI39
_RS16780
ABI39
_RS16785
carbon source
Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
+0.2
-0.9
-0.1
+0.1
-0.1
carbon source
amylopectin from maize (C)
-0.5
+0.4
-0.0
-0.3
-0.2
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
+0.3
-0.3
-0.3
+0.0
-0.2
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
-0.4
-0.3
+0.1
+0.2
-0.1
carbon source
NAG 2.5 mg/ml (C)
+0.4
-0.4
-0.4
-0.2
+0.1
carbon source
amylopectin from maize (C)
-0.6
+0.7
-0.1
-0.2
+0.1
carbon source
Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
-0.4
+0.3
-0.0
+0.3
-0.1
carbon source
B-glucan from yeast (C)
-0.5
+0.1
+0.3
+0.2
-0.1
carbon source
Locust bean gum; autoclaved 2.5 mg/ml (C)
+0.4
-0.1
-0.1
+0.2
-0.2
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
-0.1
-0.4
+0.4
+0.4
-0.1
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
-0.3
+0.4
-0.2
+0.4
-0.1
carbon source
polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
+0.2
-0.6
+0.4
+0.3
+0.0
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.7
-0.1
+0.1
-0.1
-0.2
carbon source
Mucin from porcine stomach,Type II; autoclaved 2.5 mg/ml (C)
+0.4
+0.4
-0.3
+0.1
-0.1
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-0.9
+0.7
+0.4
+0.0
+0.3
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
+0.8
-0.3
-0.1
+0.0
+0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.0
+0.7
-0.2
+0.2
-0.2
carbon source
Glycogen; filtered 2.5 mg/ml (C)
+0.1
+0.7
-0.2
+0.2
-0.1
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.5
+0.4
-0.1
-0.1
+0.1
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.3
+0.5
-0.3
+0.3
-0.0
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
+0.8
+0.3
-0.4
+0.2
-0.2
nitrogen source
L-Glutamine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.2
+0.7
-0.1
+0.2
-0.0
carbon source
Pectin from apple; filtered 1 mg/ml (C)
+0.4
+0.3
+0.3
+0.1
-0.2
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
+0.6
+0.4
-0.2
+0.2
+0.1
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
-0.2
+0.6
+0.2
+0.3
+0.1
carbon source
Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
+0.5
+0.4
+0.1
+0.3
-0.1
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
+0.2
+0.5
+0.3
+0.1
+0.1
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
+0.1
+0.8
+0.1
+0.1
+0.1
carbon source
Galactan from Potato (C)
+0.5
+0.5
+0.2
+0.0
+0.0
carbon source
Galactose 1-phosphate dipotassium salt (C)
+0.2
+0.8
+0.0
+0.2
+0.1
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